Literature DB >> 28984054

RNA uridylation: a key posttranscriptional modification shaping the coding and noncoding transcriptome.

Caroline De Almeida1, Hélène Scheer1, Hélène Zuber1, Dominique Gagliardi1.   

Abstract

RNA uridylation is a potent and widespread posttranscriptional regulator of gene expression. RNA uridylation has been detected in a range of eukaryotes including trypanosomes, animals, plants, and fungi, but with the noticeable exception of budding yeast. Virtually all classes of eukaryotic RNAs can be uridylated and uridylation can also tag viral RNAs. The untemplated addition of a few uridines at the 3' end of a transcript can have a decisive impact on RNA's fate. In rare instances, uridylation is an intrinsic step in the maturation of noncoding RNAs like for the U6 spliceosomal RNA or mitochondrial guide RNAs in trypanosomes. Uridylation can also switch specific miRNA precursors from a degradative to a processing mode. This switch depends on the number of uridines added which is regulated by the cellular context. Yet, the typical consequence of uridylation on mature noncoding RNAs or their precursors is to accelerate decay. Importantly, mRNAs are also tagged by uridylation. In fact, the advent of novel high throughput sequencing protocols has recently revealed the pervasiveness of mRNA uridylation, from plants to humans. As for noncoding RNAs, the main function to date for mRNA uridylation is to promote degradation. Yet, additional roles begin to be ascribed to U-tailing such as the control of mRNA deadenylation, translation control and possibly storage. All these new findings illustrate that we are just beginning to appreciate the diversity of roles played by RNA uridylation and its full temporal and spatial implication in regulating gene expression. WIREs RNA 2018, 9:e1440. doi: 10.1002/wrna.1440 This article is categorized under: RNA Processing > 3' End Processing RNA Processing > RNA Editing and Modification RNA Turnover and Surveillance > Turnover/Surveillance Mechanisms.
© 2017 Wiley Periodicals, Inc.

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Year:  2017        PMID: 28984054     DOI: 10.1002/wrna.1440

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  25 in total

Review 1.  RNA uridylation and decay in plants.

Authors:  Caroline de Almeida; Hélène Scheer; Anthony Gobert; Veronica Fileccia; Federico Martinelli; Hélène Zuber; Dominique Gagliardi
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-05       Impact factor: 6.237

2.  5' and 3' modifications controlling RNA degradation: from safeguards to executioners.

Authors:  Dominique Gagliardi; Andrzej Dziembowski
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-05       Impact factor: 6.237

3.  Occurrence and Functions of m6A and Other Covalent Modifications in Plant mRNA.

Authors:  Laura Arribas-Hernández; Peter Brodersen
Journal:  Plant Physiol       Date:  2019-11-20       Impact factor: 8.340

Review 4.  Biology of RNA Surveillance in Development and Disease.

Authors:  Brice Laffleur; Uttiya Basu
Journal:  Trends Cell Biol       Date:  2019-02-10       Impact factor: 20.808

5.  Molecular mechanism underlying the di-uridylation activity of Arabidopsis TUTase URT1.

Authors:  Qian Hu; Huiru Yang; Mingwei Li; Lingru Zhu; Mengqi Lv; Fudong Li; Zhiyong Zhang; Guodong Ren; Qingguo Gong
Journal:  Nucleic Acids Res       Date:  2022-10-14       Impact factor: 19.160

6.  Uridylation and the SKI complex orchestrate the Calvin cycle of photosynthesis through RNA surveillance of TKL1 in Arabidopsis.

Authors:  Xiaoyan Wang; Wenwen Kong; Yuan Wang; Jinhui Wang; Luyao Zhong; Kangwen Lao; Xianxin Dong; Dingyu Zhang; He Huang; Beixin Mo; Yu Yu; Guodong Ren
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-12       Impact factor: 12.779

7.  Gld2 activity is regulated by phosphorylation in the N-terminal domain.

Authors:  Christina Z Chung; Nileeka Balasuriya; Emad Manni; Xuguang Liu; Shawn Shun-Cheng Li; Patrick O'Donoghue; Ilka U Heinemann
Journal:  RNA Biol       Date:  2019-05-05       Impact factor: 4.652

Review 8.  Connections between 3' end processing and DNA damage response: Ten years later.

Authors:  Michael Robert Murphy; Frida Esther Kleiman
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-10-28       Impact factor: 9.957

9.  Screening by deep sequencing reveals mediators of microRNA tailing in C. elegans.

Authors:  Karl-Frédéric Vieux; Katherine P Prothro; Leanne H Kelley; Cameron Palmer; Eleanor M Maine; Isana Veksler-Lublinsky; Katherine McJunkin
Journal:  Nucleic Acids Res       Date:  2021-11-08       Impact factor: 16.971

Review 10.  The MicroRNA Family Gets Wider: The IsomiRs Classification and Role.

Authors:  Luisa Tomasello; Rosario Distefano; Giovanni Nigita; Carlo M Croce
Journal:  Front Cell Dev Biol       Date:  2021-06-09
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