Literature DB >> 30755352

Biology of RNA Surveillance in Development and Disease.

Brice Laffleur1, Uttiya Basu2.   

Abstract

The 'RNA world', in which RNA molecules stored information and acquired enzymatic properties, has been proposed to have preceded organism life. RNA is now recognized for its central role in biology, with accumulating evidence implicating coding and noncoding (nc)RNAs in myriad mechanisms regulating cellular physiology and disequilibrium in transcriptomes resulting in pathological conditions. Nascently synthesized RNAs are subjected to stringent regulation by sophisticated RNA surveillance pathways. In this review, we integrate these pathways from a developmental viewpoint, proposing RNA surveillance as the convergence of mechanisms that ensure the exact titration of RNA molecules in a spatiotemporally controlled manner, leading to development without the onset of pathological conditions, including cancer.
Copyright © 2019. Published by Elsevier Ltd.

Entities:  

Keywords:  RNA processing; RNA surveillance; development; developmental disease; differentiation; noncoding RNA

Year:  2019        PMID: 30755352      PMCID: PMC6581522          DOI: 10.1016/j.tcb.2019.01.004

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  138 in total

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2.  Endonucleolytic RNA cleavage by a eukaryotic exosome.

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Journal:  Nature       Date:  2008-12-07       Impact factor: 49.962

Review 3.  The many pathways of RNA degradation.

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4.  Deficiency in APOBEC2 leads to a shift in muscle fiber type, diminished body mass, and myopathy.

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Journal:  J Biol Chem       Date:  2009-12-17       Impact factor: 5.157

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Authors:  Jennifer L Semotok; Ramona L Cooperstock; Benjamin D Pinder; Heli K Vari; Howard D Lipshitz; Craig A Smibert
Journal:  Curr Biol       Date:  2005-02-22       Impact factor: 10.834

6.  Role for a bidentate ribonuclease in the initiation step of RNA interference.

Authors:  E Bernstein; A A Caudy; S M Hammond; G J Hannon
Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

7.  The RNA exosome targets the AID cytidine deaminase to both strands of transcribed duplex DNA substrates.

Authors:  Uttiya Basu; Fei-Long Meng; Celia Keim; Veronika Grinstein; Evangelos Pefanis; Jennifer Eccleston; Tingting Zhang; Darienne Myers; Caitlyn R Wasserman; Duane R Wesemann; Kurt Januszyk; Richard I Gregory; Haiteng Deng; Christopher D Lima; Frederick W Alt
Journal:  Cell       Date:  2011-01-20       Impact factor: 41.582

8.  Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo.

Authors:  Christel Rouget; Catherine Papin; Anthony Boureux; Anne-Cécile Meunier; Bénédicte Franco; Nicolas Robine; Eric C Lai; Alain Pelisson; Martine Simonelig
Journal:  Nature       Date:  2010-10-17       Impact factor: 49.962

9.  Mutations in the gene encoding the 3'-5' DNA exonuclease TREX1 are associated with systemic lupus erythematosus.

Authors:  Min Ae Lee-Kirsch; Maolian Gong; Dipanjan Chowdhury; Lydia Senenko; Kerstin Engel; Young-Ae Lee; Udesh de Silva; Suzanna L Bailey; Torsten Witte; Timothy J Vyse; Juha Kere; Christiane Pfeiffer; Scott Harvey; Andrew Wong; Sari Koskenmies; Oliver Hummel; Klaus Rohde; Reinhold E Schmidt; Anna F Dominiczak; Manfred Gahr; Thomas Hollis; Fred W Perrino; Judy Lieberman; Norbert Hübner
Journal:  Nat Genet       Date:  2007-07-29       Impact factor: 38.330

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Journal:  Nature       Date:  2009-08-23       Impact factor: 49.962

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  8 in total

1.  Noncoding RNA processing by DIS3 regulates chromosomal architecture and somatic hypermutation in B cells.

Authors:  Brice Laffleur; Junghyun Lim; Wanwei Zhang; Yiyun Chen; Evangelos Pefanis; Jonathan Bizarro; Carolina R Batista; Lijing Wu; Aris N Economides; Jiguang Wang; Uttiya Basu
Journal:  Nat Genet       Date:  2021-02-01       Impact factor: 38.330

2.  The proteomic analysis shows enrichment of RNA surveillance pathways in adult SHH and extensive metabolic reprogramming in Group 3 medulloblastomas.

Authors:  Manubhai Kp; Anurag Kumar; Deeptarup Biswas; Aliasgar Moiyadi; Prakash Shetty; Tejpal Gupta; Sridhar Epari; Neelam Shirsat; Sanjeeva Srivastava
Journal:  Brain Tumor Pathol       Date:  2021-01-12       Impact factor: 3.298

Review 3.  8-Oxoguanine: from oxidative damage to epigenetic and epitranscriptional modification.

Authors:  Ja Young Hahm; Jongyeun Park; Eun-Sook Jang; Sung Wook Chi
Journal:  Exp Mol Med       Date:  2022-10-21       Impact factor: 12.153

4.  Hydrogen-deuterium exchange mass spectrometry of Mtr4 with diverse RNAs reveals substrate-dependent dynamics and interfaces in the arch.

Authors:  Naifu Zhang; Keith J Olsen; Darby Ball; Sean J Johnson; Sheena D'Arcy
Journal:  Nucleic Acids Res       Date:  2022-04-22       Impact factor: 19.160

Review 5.  Regulation of long non-coding RNAs and genome dynamics by the RNA surveillance machinery.

Authors:  Lekha Nair; Hachung Chung; Uttiya Basu
Journal:  Nat Rev Mol Cell Biol       Date:  2020-02-04       Impact factor: 94.444

6.  APC7 mediates ubiquitin signaling in constitutive heterochromatin in the developing mammalian brain.

Authors:  Cole J Ferguson; Olivia Urso; Tatyana Bodrug; Brandon M Gassaway; Edmond R Watson; Jesuraj R Prabu; Pablo Lara-Gonzalez; Raquel C Martinez-Chacin; Dennis Y Wu; Karlla W Brigatti; Erik G Puffenberger; Cora M Taylor; Barbara Haas-Givler; Robert N Jinks; Kevin A Strauss; Arshad Desai; Harrison W Gabel; Steven P Gygi; Brenda A Schulman; Nicholas G Brown; Azad Bonni
Journal:  Mol Cell       Date:  2021-12-22       Impact factor: 17.970

7.  Transcriptome Signature of Immune Cells Post Reovirus Treatment in KRAS Mutated Colorectal Cancer.

Authors:  Elisha J Fogel; Avishai Samouha; Sanjay Goel; Radhashree Maitra
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8.  Transcriptome Profiling of m6A mRNA Modification in Bovine Mammary Epithelial Cells Treated with Escherichia coli.

Authors:  Ting Li; Changjie Lin; Yifan Zhu; Haojun Xu; Yiya Yin; Chaohao Wang; Xin Tang; Tongxing Song; Aizhen Guo; Yingyu Chen; Changmin Hu
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  8 in total

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