Literature DB >> 31657151

Connections between 3' end processing and DNA damage response: Ten years later.

Michael Robert Murphy1, Frida Esther Kleiman1.   

Abstract

Ten years ago we reviewed how the cellular DNA damage response (DDR) is controlled by changes in the functional and structural properties of nuclear proteins, resulting in a timely coordinated control of gene expression that allows DNA repair. Expression of genes that play a role in DDR is regulated not only at transcriptional level during mRNA biosynthesis but also by changing steady-state levels due to turnover of the transcripts. The 3' end processing machinery, which is important in the regulation of mRNA stability, is involved in these gene-specific responses to DNA damage. Here, we review the latest mechanistic connections described between 3' end processing and DDR, with a special emphasis on alternative polyadenylation, microRNA and RNA binding proteins-mediated deadenylation, and discuss the implications of deregulation of these steps in DDR and human disease. This article is categorized under: RNA Processing > 3' End Processing RNA-Based Catalysis > Miscellaneous RNA-Catalyzed Reactions RNA in Disease and Development > RNA in Disease.
© 2019 Wiley Periodicals, Inc.

Entities:  

Keywords:  3′ end processing; DNA damage response; deadenylation; polyadenylation

Mesh:

Substances:

Year:  2019        PMID: 31657151      PMCID: PMC7295566          DOI: 10.1002/wrna.1571

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  310 in total

1.  Functional interaction of BRCA1-associated BARD1 with polyadenylation factor CstF-50.

Authors:  F E Kleiman; J L Manley
Journal:  Science       Date:  1999-09-03       Impact factor: 47.728

2.  Phosphorylation of tristetraprolin by MK2 impairs AU-rich element mRNA decay by preventing deadenylase recruitment.

Authors:  Sandra L Clement; Claudia Scheckel; Georg Stoecklin; Jens Lykke-Andersen
Journal:  Mol Cell Biol       Date:  2010-11-15       Impact factor: 4.272

Review 3.  Deadenylation: enzymes, regulation, and functional implications.

Authors:  Yong-Bin Yan
Journal:  Wiley Interdiscip Rev RNA       Date:  2014-02-12       Impact factor: 9.957

4.  Global dissociation of HuR-mRNA complexes promotes cell survival after ionizing radiation.

Authors:  Kiyoshi Masuda; Kotb Abdelmohsen; Mihee M Kim; Subramanya Srikantan; Eun Kyung Lee; Kumiko Tominaga; Roza Selimyan; Jennifer L Martindale; Xiaoling Yang; Elin Lehrmann; Yongqing Zhang; Kevin G Becker; Jian-Ying Wang; Hyeon Ho Kim; Myriam Gorospe
Journal:  EMBO J       Date:  2011-02-11       Impact factor: 11.598

5.  Nuclear deadenylation/polyadenylation factors regulate 3' processing in response to DNA damage.

Authors:  Murat A Cevher; Xiaokan Zhang; Sully Fernandez; Sergey Kim; Jorge Baquero; Per Nilsson; Sean Lee; Anders Virtanen; Frida E Kleiman
Journal:  EMBO J       Date:  2010-04-08       Impact factor: 11.598

6.  Posttranscriptional derepression of GADD45alpha by genotoxic stress.

Authors:  Ashish Lal; Kotb Abdelmohsen; Rudolf Pullmann; Tomoko Kawai; Stefanie Galban; Xiaoling Yang; Gary Brewer; Myriam Gorospe
Journal:  Mol Cell       Date:  2006-04-07       Impact factor: 17.970

7.  A Dominant Mutation in Human RAD51 Reveals Its Function in DNA Interstrand Crosslink Repair Independent of Homologous Recombination.

Authors:  Anderson T Wang; Taeho Kim; John E Wagner; Brooke A Conti; Francis P Lach; Athena L Huang; Henrik Molina; Erica M Sanborn; Heather Zierhut; Belinda K Cornes; Avinash Abhyankar; Carrie Sougnez; Stacey B Gabriel; Arleen D Auerbach; Stephen C Kowalczykowski; Agata Smogorzewska
Journal:  Mol Cell       Date:  2015-08-06       Impact factor: 17.970

Review 8.  Nuclear Long Noncoding RNAs: Key Regulators of Gene Expression.

Authors:  Qinyu Sun; Qinyu Hao; Kannanganattu V Prasanth
Journal:  Trends Genet       Date:  2018-02-07       Impact factor: 11.639

9.  miR-182-mediated downregulation of BRCA1 impacts DNA repair and sensitivity to PARP inhibitors.

Authors:  Patryk Moskwa; Francesca M Buffa; Yunfeng Pan; Rohit Panchakshari; Ponnari Gottipati; Ruth J Muschel; John Beech; Ritu Kulshrestha; Kotb Abdelmohsen; David M Weinstock; Myriam Gorospe; Adrian L Harris; Thomas Helleday; Dipanjan Chowdhury
Journal:  Mol Cell       Date:  2010-12-30       Impact factor: 17.970

Review 10.  The end of the message: multiple protein-RNA interactions define the mRNA polyadenylation site.

Authors:  Yongsheng Shi; James L Manley
Journal:  Genes Dev       Date:  2015-05-01       Impact factor: 11.361

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  3 in total

1.  Poly(A) tail dynamics: Measuring polyadenylation, deadenylation and poly(A) tail length.

Authors:  Michael Robert Murphy; Ahmet Doymaz; Frida Esther Kleiman
Journal:  Methods Enzymol       Date:  2021-05-03       Impact factor: 1.682

2.  Chronic exposure of humans to high level natural background radiation leads to robust expression of protective stress response proteins.

Authors:  S Nishad; Pankaj Kumar Chauhan; R Sowdhamini; Anu Ghosh
Journal:  Sci Rep       Date:  2021-01-19       Impact factor: 4.379

3.  PARN Knockdown in Cell Lines Results in Differential and Cell-Specific Alterations in the Expression of Cancer-Associated mRNAs.

Authors:  Nishith Babu; Dechamma Pandyanda Nanjappa; Sandra Nazareth; Srividya Arjuna; Anirban Chakraborty
Journal:  Asian Pac J Cancer Prev       Date:  2022-01-01
  3 in total

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