Literature DB >> 28972184

Activation and mechanism of a cryptic oviedomycin gene cluster via the disruption of a global regulatory gene, adpA, in Streptomyces ansochromogenes.

Jingjing Xu1,2, Jihui Zhang1, Jiming Zhuo1,2, Yue Li1, Yuqing Tian3,2, Huarong Tan4,2.   

Abstract

Genome sequencing analysis has revealed at least 35 clusters of likely biosynthetic genes for secondary metabolites in Streptomyces ansochromogenes. Disruption of adpA encoding a global regulator (AdpA) resulted in the failure of nikkomycin production, whereas other antibacterial activities against Staphylococcus aureus, Bacillus cereus, and Bacillus subtilis were observed with the fermentation broth of ΔadpA but not with that of the wild-type strain. Transcriptional analysis showed that a cryptic gene cluster (pks7), which shows high identity with an oviedomycin biosynthetic gene cluster (ovm), was activated in ΔadpA. The corresponding product of pks7 was characterized as oviedomycin by MS and NMR spectroscopy. To understand the molecular mechanism of ovm activation, the roles of six regulatory genes situated in the ovm cluster were investigated. Among them, proteins encoded by co-transcribed genes ovmZ and ovmW are positive regulators of ovm AdpA directly represses the transcription of ovmZ and ovmW Co-overexpression of ovmZ and ovmW can relieve the repression of AdpA on ovm transcription and effectively activate oviedomycin biosynthesis. The promoter of ovmOI-ovmH is identified as the direct target of OvmZ and OvmW. This is the first report that AdpA can simultaneously activate nikkomycin biosynthesis but repress oviedomycin biosynthesis in one strain. Our findings provide an effective strategy that is able to activate cryptic secondary metabolite gene clusters by genetic manipulation of global regulatory genes.
© 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  AdpA; Streptomyces ansochromogenes; cryptic gene clusters; gene regulation; global regulators; metabolism; natural product biosynthesis; oviedomycin; polyketide; transcriptional coactivator

Mesh:

Substances:

Year:  2017        PMID: 28972184      PMCID: PMC5712612          DOI: 10.1074/jbc.M117.809145

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  52 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

5.  Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).

Authors:  S D Bentley; K F Chater; A-M Cerdeño-Tárraga; G L Challis; N R Thomson; K D James; D E Harris; M A Quail; H Kieser; D Harper; A Bateman; S Brown; G Chandra; C W Chen; M Collins; A Cronin; A Fraser; A Goble; J Hidalgo; T Hornsby; S Howarth; C-H Huang; T Kieser; L Larke; L Murphy; K Oliver; S O'Neil; E Rabbinowitsch; M-A Rajandream; K Rutherford; S Rutter; K Seeger; D Saunders; S Sharp; R Squares; S Squares; K Taylor; T Warren; A Wietzorrek; J Woodward; B G Barrell; J Parkhill; D A Hopwood
Journal:  Nature       Date:  2002-05-09       Impact factor: 49.962

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Authors:  Carmen Méndez; Eva Künzel; Fredilyn Lipata; Felipe Lombó; William Cotham; Michael Walla; Daniel W Bearden; Alfredo F Braña; Jose A Salas; Jürgen Rohr
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Authors:  Steven T Pullan; Govind Chandra; Mervyn J Bibb; Mike Merrick
Journal:  BMC Genomics       Date:  2011-04-04       Impact factor: 3.969

10.  antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

Authors:  Marnix H Medema; Kai Blin; Peter Cimermancic; Victor de Jager; Piotr Zakrzewski; Michael A Fischbach; Tilmann Weber; Eriko Takano; Rainer Breitling
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971

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  23 in total

Review 1.  Streptomycetes: Surrogate hosts for the genetic manipulation of biosynthetic gene clusters and production of natural products.

Authors:  Keshav K Nepal; Guojun Wang
Journal:  Biotechnol Adv       Date:  2018-10-09       Impact factor: 14.227

Review 2.  Heterologous expression-facilitated natural products' discovery in actinomycetes.

Authors:  Min Xu; Gerard D Wright
Journal:  J Ind Microbiol Biotechnol       Date:  2018-11-16       Impact factor: 3.346

Review 3.  The regulatory cascades of antibiotic production in Streptomyces.

Authors:  Haiyang Xia; Xinqiao Zhan; Xu-Ming Mao; Yong-Quan Li
Journal:  World J Microbiol Biotechnol       Date:  2020-01-02       Impact factor: 3.312

4.  SspH, a Novel HATPase Family Regulator, Controls Antibiotic Biosynthesis in Streptomyces.

Authors:  Xue Yang; Yanyan Zhang; Shanshan Li; Lan Ye; Xiangjing Wang; Wensheng Xiang
Journal:  Antibiotics (Basel)       Date:  2022-04-19

5.  Identification of a butenolide signaling system that regulates nikkomycin biosynthesis in Streptomyces.

Authors:  Wenxi Wang; Jihui Zhang; Xiang Liu; Dong Li; Yue Li; Yuqing Tian; Huarong Tan
Journal:  J Biol Chem       Date:  2018-10-24       Impact factor: 5.157

6.  A Novel AdpA Homologue Negatively Regulates Morphological Differentiation in Streptomyces xiamenensis 318.

Authors:  Xu-Liang Bu; Jing-Yi Weng; Bei-Bei He; Min-Juan Xu; Jun Xu
Journal:  Appl Environ Microbiol       Date:  2019-03-22       Impact factor: 4.792

Review 7.  A Natural Product Chemist's Guide to Unlocking Silent Biosynthetic Gene Clusters.

Authors:  Brett C Covington; Fei Xu; Mohammad R Seyedsayamdost
Journal:  Annu Rev Biochem       Date:  2021-04-13       Impact factor: 27.258

8.  Uncovering production of specialized metabolites by Streptomyces argillaceus: Activation of cryptic biosynthesis gene clusters using nutritional and genetic approaches.

Authors:  Adriana Becerril; Susana Álvarez; Alfredo F Braña; Sergio Rico; Margarita Díaz; Ramón I Santamaría; José A Salas; Carmen Méndez
Journal:  PLoS One       Date:  2018-05-24       Impact factor: 3.240

9.  Characterization of the Jomthonic Acids Biosynthesis Pathway and Isolation of Novel Analogues in Streptomyces caniferus GUA-06-05-006A.

Authors:  Raúl García-Salcedo; Rubén Álvarez-Álvarez; Carlos Olano; Librada Cañedo; Alfredo F Braña; Carmen Méndez; Fernando de la Calle; José A Salas
Journal:  Mar Drugs       Date:  2018-07-31       Impact factor: 5.118

Review 10.  Activation of microbial secondary metabolic pathways: Avenues and challenges.

Authors:  Bikash Baral; Amir Akhgari; Mikko Metsä-Ketelä
Journal:  Synth Syst Biotechnol       Date:  2018-09-12
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