Literature DB >> 31548720

Improving grain yield, stress resilience and quality of bread wheat using large-scale genomics.

Philomin Juliana1, Jesse Poland2, Julio Huerta-Espino3, Sandesh Shrestha2, José Crossa1, Leonardo Crespo-Herrera1, Fernando Henrique Toledo1, Velu Govindan1, Suchismita Mondal1, Uttam Kumar4, Sridhar Bhavani1, Pawan K Singh1, Mandeep S Randhawa5, Xinyao He1, Carlos Guzman1,6, Susanne Dreisigacker1, Matthew N Rouse7, Yue Jin7, Paulino Pérez-Rodríguez8, Osval A Montesinos-López9, Daljit Singh2, Mohammad Mokhlesur Rahman2,10, Felix Marza11, Ravi Prakash Singh12.   

Abstract

Bread wheat improvement using genomic tools is essential for accelerating trait genetic gains. Here we report the genomic predictabilities of 35 key traits and demonstrate the potential of genomic selection for wheat end-use quality. We also performed a large genome-wide association study that identified several significant marker-trait associations for 50 traits evaluated in South Asia, Africa and the Americas. Furthermore, we built a reference wheat genotype-phenotype map, explored allele frequency dynamics over time and fingerprinted 44,624 wheat lines for trait-associated markers, generating over 7.6 million data points, which together will provide a valuable resource to the wheat community for enhancing productivity and stress resilience.

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Year:  2019        PMID: 31548720     DOI: 10.1038/s41588-019-0496-6

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  52 in total

1.  Prediction of total genetic value using genome-wide dense marker maps.

Authors:  T H Meuwissen; B J Hayes; M E Goddard
Journal:  Genetics       Date:  2001-04       Impact factor: 4.562

2.  Dwarf8 polymorphisms associate with variation in flowering time.

Authors:  J M Thornsberry; M M Goodman; J Doebley; S Kresovich; D Nielsen; E S Buckler
Journal:  Nat Genet       Date:  2001-07       Impact factor: 38.330

Review 3.  Genetic association mapping and genome organization of maize.

Authors:  Jianming Yu; Edward S Buckler
Journal:  Curr Opin Biotechnol       Date:  2006-02-28       Impact factor: 9.740

Review 4.  Climate change impacts on global food security.

Authors:  Tim Wheeler; Joachim von Braun
Journal:  Science       Date:  2013-08-02       Impact factor: 47.728

5.  A high-density genetic map of hexaploid wheat (Triticum aestivum L.) from the cross Chinese Spring x SQ1 and its use to compare QTLs for grain yield across a range of environments.

Authors:  S A Quarrie; A Steed; C Calestani; A Semikhodskii; C Lebreton; C Chinoy; N Steele; D Pljevljakusić; E Waterman; J Weyen; J Schondelmaier; D Z Habash; P Farmer; L Saker; D T Clarkson; A Abugalieva; M Yessimbekova; Y Turuspekov; S Abugalieva; R Tuberosa; M-C Sanguineti; P A Hollington; R Aragués; A Royo; D Dodig
Journal:  Theor Appl Genet       Date:  2005-02-18       Impact factor: 5.699

Review 6.  Genomic Selection in Plant Breeding: Methods, Models, and Perspectives.

Authors:  José Crossa; Paulino Pérez-Rodríguez; Jaime Cuevas; Osval Montesinos-López; Diego Jarquín; Gustavo de Los Campos; Juan Burgueño; Juan M González-Camacho; Sergio Pérez-Elizalde; Yoseph Beyene; Susanne Dreisigacker; Ravi Singh; Xuecai Zhang; Manje Gowda; Manish Roorkiwal; Jessica Rutkoski; Rajeev K Varshney
Journal:  Trends Plant Sci       Date:  2017-09-28       Impact factor: 18.313

7.  Recent patterns of crop yield growth and stagnation.

Authors:  Deepak K Ray; Navin Ramankutty; Nathaniel D Mueller; Paul C West; Jonathan A Foley
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

Review 8.  Disease Impact on Wheat Yield Potential and Prospects of Genetic Control.

Authors:  Ravi P Singh; Pawan K Singh; Jessica Rutkoski; David P Hodson; Xinyao He; Lise N Jørgensen; Mogens S Hovmøller; Julio Huerta-Espino
Journal:  Annu Rev Phytopathol       Date:  2016-01-08       Impact factor: 13.078

9.  Food security: the challenge of increasing wheat yield and the importance of not compromising food safety.

Authors:  T Curtis; N G Halford
Journal:  Ann Appl Biol       Date:  2014-02-21       Impact factor: 2.750

Review 10.  The contribution of wheat to human diet and health.

Authors:  Peter R Shewry; Sandra J Hey
Journal:  Food Energy Secur       Date:  2015-08-14       Impact factor: 4.109

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  53 in total

1.  InDels Identification and Association Analysis with Spike and Awn Length in Chinese Wheat Mini-Core Collection.

Authors:  Zhenyu Wang; Zhongyin Deng; Xingchen Kong; Fang Wang; Jiantao Guan; Dada Cui; Guoliang Sun; Ruyi Liao; Mingxue Fu; Yuqing Che; Chenyang Hao; Shuaifeng Geng; Xueyong Zhang; Peng Zhou; Long Mao; Shaoshuai Liu; Aili Li
Journal:  Int J Mol Sci       Date:  2022-05-17       Impact factor: 6.208

2.  Data-driven, participatory characterization of farmer varieties discloses teff breeding potential under current and future climates.

Authors:  Aemiro Bezabih Woldeyohannes; Sessen Daniel Iohannes; Mara Miculan; Leonardo Caproni; Jemal Seid Ahmed; Kauê de Sousa; Ermias Abate Desta; Carlo Fadda; Mario Enrico Pè; Matteo Dell'Acqua
Journal:  Elife       Date:  2022-09-02       Impact factor: 8.713

3.  Limited haplotype diversity underlies polygenic trait architecture across 70 years of wheat breeding.

Authors:  Michael F Scott; Nick Fradgley; Richard Mott; James Cockram; Alison R Bentley; Thomas Brabbs; Fiona Corke; Keith A Gardner; Richard Horsnell; Phil Howell; Olufunmilayo Ladejobi; Ian J Mackay
Journal:  Genome Biol       Date:  2021-05-06       Impact factor: 13.583

4.  Screening and Mapping for Head Blast Resistance in a Panel of CIMMYT and South Asian Bread Wheat Germplasm.

Authors:  Xinyao He; Philomin Juliana; Muhammad R Kabir; Krishna K Roy; Rabiul Islam; Felix Marza; Gary Peterson; Gyanendra P Singh; Aakash Chawade; Arun K Joshi; Ravi P Singh; Pawan K Singh
Journal:  Front Genet       Date:  2021-05-13       Impact factor: 4.599

5.  Refined mapping of stripe rust resistance gene YrP10090 within a desirable haplotype for wheat improvement on chromosome 6A.

Authors:  Shengjie Liu; Shuo Huang; Qingdong Zeng; Xiaoting Wang; Rui Yu; Qilin Wang; Ravi P Singh; Sridhar Bhavani; Zhensheng Kang; Jianhui Wu; Dejun Han
Journal:  Theor Appl Genet       Date:  2021-03-08       Impact factor: 5.574

6.  Meta-analysis of genome-wide association studies reveal common loci controlling agronomic and quality traits in a wide range of normal and heat stressed environments.

Authors:  Reem Joukhadar; Rebecca Thistlethwaite; Richard Trethowan; Gabriel Keeble-Gagnère; Matthew J Hayden; Smi Ullah; Hans D Daetwyler
Journal:  Theor Appl Genet       Date:  2021-03-25       Impact factor: 5.574

7.  Unlocking big data doubled the accuracy in predicting the grain yield in hybrid wheat.

Authors:  Yusheng Zhao; Patrick Thorwarth; Yong Jiang; Norman Philipp; Albert W Schulthess; Mario Gils; Philipp H G Boeven; C Friedrich H Longin; Johannes Schacht; Erhard Ebmeyer; Viktor Korzun; Vilson Mirdita; Jost Dörnte; Ulrike Avenhaus; Ralf Horbach; Hilmar Cöster; Josef Holzapfel; Ludwig Ramgraber; Simon Kühnle; Pierrick Varenne; Anne Starke; Friederike Schürmann; Sebastian Beier; Uwe Scholz; Fang Liu; Renate H Schmidt; Jochen C Reif
Journal:  Sci Adv       Date:  2021-06-11       Impact factor: 14.136

8.  Using high-throughput multiple optical phenotyping to decipher the genetic architecture of maize drought tolerance.

Authors:  Xi Wu; Hui Feng; Di Wu; Shijuan Yan; Pei Zhang; Wenbin Wang; Jun Zhang; Junli Ye; Guoxin Dai; Yuan Fan; Weikun Li; Baoxing Song; Zedong Geng; Wanli Yang; Guoxin Chen; Feng Qin; William Terzaghi; Michelle Stitzer; Lin Li; Lizhong Xiong; Jianbing Yan; Edward Buckler; Wanneng Yang; Mingqiu Dai
Journal:  Genome Biol       Date:  2021-06-24       Impact factor: 13.583

9.  Harnessing translational research in wheat for climate resilience.

Authors:  Matthew P Reynolds; Janet M Lewis; Karim Ammar; Bhoja R Basnet; Leonardo Crespo-Herrera; José Crossa; Kanwarpal S Dhugga; Susanne Dreisigacker; Philomin Juliana; Hannes Karwat; Masahiro Kishii; Margaret R Krause; Peter Langridge; Azam Lashkari; Suchismita Mondal; Thomas Payne; Diego Pequeno; Francisco Pinto; Carolina Sansaloni; Urs Schulthess; Ravi P Singh; Kai Sonder; Sivakumar Sukumaran; Wei Xiong; Hans J Braun
Journal:  J Exp Bot       Date:  2021-07-10       Impact factor: 6.992

Review 10.  Genomics and breeding innovations for enhancing genetic gain for climate resilience and nutrition traits.

Authors:  Pallavi Sinha; Vikas K Singh; Abhishek Bohra; Arvind Kumar; Jochen C Reif; Rajeev K Varshney
Journal:  Theor Appl Genet       Date:  2021-05-20       Impact factor: 5.699

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