Literature DB >> 28964683

APOBEC: From mutator to editor.

Bei Yang1, Xiaosa Li2, Liqun Lei2, Jia Chen3.   

Abstract

APOBECs (apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like) are a family of cytidine deaminases that prefer single-stranded nucleic acids as substrates. Besides their physiological functions, APOBEC family members have been found to cause hypermutations of cancer genomes, which could be correlated with cancer development and poor prognosis. Recently, APOBEC family members have been combined with the versatile CRISPR/Cas9 system to perform targeted base editing or induce hypermutagenesis. This combination improved the CRISPR/Cas9-mediated gene editing at single-base precision, greatly enhancing its usefulness. Here, we review the physiological functions and structural characteristics of APOBEC family members and their roles as endogenous mutators that contribute to hypermutations during carcinogenesis. We also review the various iterations of the APOBEC-CRISPR/Cas9 gene-editing tools, pointing out their features and limitations as well as the possibilities for future developments.
Copyright © 2017 Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, and Genetics Society of China. Published by Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  APOBEC; Base editing; Base editor; CRISPR/Cas9; Mutagenesis

Mesh:

Substances:

Year:  2017        PMID: 28964683     DOI: 10.1016/j.jgg.2017.04.009

Source DB:  PubMed          Journal:  J Genet Genomics        ISSN: 1673-8527            Impact factor:   4.275


  23 in total

1.  Efficient C-to-T base editing in plants using a fusion of nCas9 and human APOBEC3A.

Authors:  Yuan Zong; Qianna Song; Chao Li; Shuai Jin; Dingbo Zhang; Yanpeng Wang; Jin-Long Qiu; Caixia Gao
Journal:  Nat Biotechnol       Date:  2018-10-01       Impact factor: 54.908

2.  Efficient base editing in methylated regions with a human APOBEC3A-Cas9 fusion.

Authors:  Xiao Wang; Jianan Li; Ying Wang; Bei Yang; Jia Wei; Jing Wu; Ruixuan Wang; Xingxu Huang; Jia Chen; Li Yang
Journal:  Nat Biotechnol       Date:  2018-08-20       Impact factor: 54.908

Review 3.  Biology of RNA Surveillance in Development and Disease.

Authors:  Brice Laffleur; Uttiya Basu
Journal:  Trends Cell Biol       Date:  2019-02-10       Impact factor: 20.808

Review 4.  Modulating protein-protein interaction networks in protein homeostasis.

Authors:  Mengqi Zhong; Gregory M Lee; Eline Sijbesma; Christian Ottmann; Michelle R Arkin
Journal:  Curr Opin Chem Biol       Date:  2019-03-23       Impact factor: 8.822

Review 5.  CRISPR-Based Genome Editing: Advancements and Opportunities for Rice Improvement.

Authors:  Workie Anley Zegeye; Mesfin Tsegaw; Yingxin Zhang; Liyong Cao
Journal:  Int J Mol Sci       Date:  2022-04-18       Impact factor: 6.208

Review 6.  Detection of DNA Modifications by Sequence-Specific Transcription Factors.

Authors:  Jie Yang; Xing Zhang; Robert M Blumenthal; Xiaodong Cheng
Journal:  J Mol Biol       Date:  2019-10-15       Impact factor: 5.469

7.  Eliminating base-editor-induced genome-wide and transcriptome-wide off-target mutations.

Authors:  Lijie Wang; Wei Xue; Hongxia Zhang; Runze Gao; Houyuan Qiu; Jia Wei; Lina Zhou; Yun-Ni Lei; Xiaocheng Wu; Xiao Li; Chengfang Liu; Jing Wu; Qiubing Chen; Hanhui Ma; Xingxu Huang; Cheguo Cai; Ying Zhang; Bei Yang; Hao Yin; Li Yang; Jia Chen
Journal:  Nat Cell Biol       Date:  2021-05-10       Impact factor: 28.824

8.  Expanded base editing in rice and wheat using a Cas9-adenosine deaminase fusion.

Authors:  Chao Li; Yuan Zong; Yanpeng Wang; Shuai Jin; Dingbo Zhang; Qianna Song; Rui Zhang; Caixia Gao
Journal:  Genome Biol       Date:  2018-05-29       Impact factor: 13.583

Review 9.  Modeling the Embrace of a Mutator: APOBEC Selection of Nucleic Acid Ligands.

Authors:  Jason D Salter; Harold C Smith
Journal:  Trends Biochem Sci       Date:  2018-05-23       Impact factor: 13.807

10.  Epstein-Barr virus BORF2 inhibits cellular APOBEC3B to preserve viral genome integrity.

Authors:  Adam Z Cheng; Jaime Yockteng-Melgar; Matthew C Jarvis; Natasha Malik-Soni; Ivan Borozan; Michael A Carpenter; Jennifer L McCann; Diako Ebrahimi; Nadine M Shaban; Edyta Marcon; Jack Greenblatt; William L Brown; Lori Frappier; Reuben S Harris
Journal:  Nat Microbiol       Date:  2018-11-12       Impact factor: 17.745

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