| Literature DB >> 28944021 |
Tinyiko Maluleke1, David S Jacobs1, Henning Winker2.
Abstract
Divergence in phenotypic traits may arise from the interaction of different evolutionary forces, including different kinds of selection (e.g., ecological), genetic drift, and phenotypic plasticity. Sensory systems play an important role in survival and reproduction, and divergent selection on such systems may result in lineage diversification. Such diversification could be largely influenced by selection in different environments as a result of isolation by environment (IbE). We investigated this process using geographic variation in the resting echolocation frequency of the horseshoe bat species, Rhinolophus damarensis, as a test case. Bats were sampled along a latitudinal gradient ranging from 16°S to 32°S in the arid western half of southern Africa. We measured body size and peak resting frequencies (RF) from handheld individual bats. Three hypotheses for the divergence in RF were tested: (1) James' Rule, (2) IbE, and (3) genetic drift through isolation by distance (IbD) to isolate the effects of body size, local climatic conditions, and geographic distance, respectively, on the resting frequency of R. damarensis. Our results did not support genetic drift because there was no correlation between RF variation and geographic distance. Our results also did not support James' Rule because there was no significant relationship between (1) geographic distances and RF, (2) body size and RF, or (3) body size and climatic variables. Instead, we found support for IbE in the form of a correlation between RF and both region and annual mean temperature, suggesting that RF variation may be the result of environmental discontinuities. The environmental discontinuities coincided with previously reported genetic divergence. Climatic gradients in conjunction with environmental discontinuities could lead to local adaptation in sensory signals and directed dispersal such that gene flow is restricted, allowing lineages to diverge. However, our study cannot exclude the role of processes like phenotypic plasticity in phenotypic variation.Entities:
Keywords: acoustic signals; climate; horseshoe bats; resting frequency; selection
Year: 2017 PMID: 28944021 PMCID: PMC5606872 DOI: 10.1002/ece3.3251
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
Figure 1A typical call of Rhinolophus damarensis. Top = oscillogram; Bottom = spectrogram
Figure 2Major biomes of southern Africa (Rutherford, 1997) and the sampling localities for Rhinolophus damarensis. Key to abbreviations: Wondergat Cave (WC), Arnhem Cave (AC), Märcker Cave (MC), Orange River (OR), Riemvasmaak (RM), Soetfontein (SF), and Untjiesburg Farm (UF). The populations in red comprise the northern lineage, and those in black comprise the southern lineage (see Jacobs et al., 2013)
Figure 3Spatial autocorrelation due to strong spatial dependencies in observed data (a) and (b) a graph with no spatial autocorrelation after spatial dependencies had been accounted for by the simple random‐effects model
Figure 4Model validation graphs showing residuals closely approximating a normal distribution with no violation of the assumption of homogenous variance. The graphs are (a) predicted values against residuals that are clearly spread out, (b) a linear relationship between sample quantiles and theoretical quantiles, and (c) histogram showing a normal distribution between frequency and residuals
The forearm length, resting echolocation frequency (mean ± SD), environmental variables and calculated atmospheric attenuation and prey detection range for each locality at which Rhinolophus damarensis was sampled. The number of individuals per population is shown in parentheses. Localities are shown in the order of increasing latitude from north to south. The northern populations are designated by a “N” next to their names. Sample sizes are given in parentheses
| Locality | |||||||
|---|---|---|---|---|---|---|---|
| WondergatN | ArnhemN | Märcker | Soetfontein | Riemvasmaak | Orange River | Uintjiesberg | |
| FA (mm) Mean ± | 50.6 ± 1.5 | 51.8 ± 1.9 | 50.5 ± 1.9 | 48.9 ± 2.8 | 49.8 ± 1.2 | 49.1 ± 1.6 | 52.3 ± 1.1 |
| Range | 47.1–51.82 | 46.8–54.8 | 48.1–52.7 | 43.3–51.4 | 47.6–51.1 | 45.5–51.6 | 50.4–54.6 |
| (15) | (17) | (6) | (7) | (10) | (29) | (22) | |
| RF (kHz) Mean ± | 84.4 ± 0.7 | 85.0 ± 0.9 | 84.7 ± 1.1 | 85.7 ± 0.8 | 87.6 ± 1.1 | 85.9 ± 1.3 | 84.9 ± 0.7 |
| Range | 82.9–85.3 | 83.8–86.1 | 82.8–85.7 | 84.7–86.5 | 85.8–88.9 | 83.5–88.3 | 83.3–86.2 |
| (15) | (17) | (6) | (7) | (10) | (29) | (22) | |
| F‐RF (kHz) Mean ± | 84.5 ± 0.4 | 85.1 ± 1.0 | 85.2 ± 0.7 | 86.1 ± 0.7 | 87.9 ± 1.0 | 87.1 ± 0.8 | 84.9 ± 0.7 |
| Range | 84.1–85.3 | 83.6–86.1 | 84.4–85.7 | 85.1–86.8 | 86.1–89.0 | 85.9–88.3 | 83.3–86.1 |
| (7) | (13) | (3) | (4) | (7) | (11) | (22) | |
| M‐RF (kHz) Mean ± | 84.4 ± 0.9 | 84.8 ± 0.3 | 84.1 ± 1.4 | 85.2 ± 0.5 | 86.9 ± 1.1 | 85.2 ± 1.0 | – |
| Range | 82.9–85.2 | 84.6–85.2 | 82.8–85.5 | 85.3–85.7 | 85.8–88.1 | 83.4–87.1 | – |
| (8) | (4) | (3) | (3) | (3) | (18) | – | |
| Lat | −20.51 | −22.70 | −24.08 | −28.38 | −28.70 | −28.70 | −30.83 |
| Reg | North | North | South | South | South | South | South |
| RH (%) | 38.25 | 38.47 | 32.80 | 41.75 | 35.9 | 39.15 | 41.54 |
| AMT (°C) | 21.67 | 19.19 | 15.78 | 18.32 | 20.24 | 18.82 | 15.53 |
| AA (dB/m) | 2.56 ± 0.02 | 2.32 ± 0.02 | 1.84 ± 0.03 | 2.36 ± 0.02 | 2.41 ± 0.03 | 2.33 ± 0.04 | 2.05 ± 0.02 |
| PDR (m) | 8.87 ± 0.06 | 9.54 ± 0.07 | 11.27 ± 0.14 | 9.43 ± 0.08 | 9.25 ± 0.11 | 9.49 ± 0.12 | 10.42 ± 0.06 |
AA, atmospheric attenuation; AMT, annual mean temperature; FA, forearm length; F‐RF, female resting frequency; Lat, latitude; M‐RF, male resting frequency; PDR, prey detection range; Reg, region is divided into the northern and southern regions; RF, resting frequency; RH, relative humidity. Number of individuals (n) per population is shown in parentheses.
Results from linear mixed‐effects models (LMEs) testing for association between the resting frequency of Rhinolophus damarensis and environmental variables
| Model | K | AICc | Delta_AICc | ModelLik | AICcWt | LL | Cum.wt | ER |
|---|---|---|---|---|---|---|---|---|
|
|
|
|
|
|
|
| 0.535 | |
| Reg + AMT + Sex + FA | 7 | 298.11 | 2.218 | 0.330 | 0.176 |
| 0.712 | 3.03 |
| Lat + AMT + Sex | 6 | 300.37 | 4.476 | 0.107 | 0.057 |
| 0.769 | 8.93 |
| Reg + PDR + Sex | 6 | 300.85 | 4.956 | 0.084 | 0.045 |
| 0.814 | 11.91 |
| Reg + AA + Sex | 6 | 301.16 | 5.271 | 0.072 | 0.038 |
| 0.852 | 13.95 |
| Sex | 4 | 302.58 | 6.690 | 0.035 | 0.019 |
| 0.879 | 28.1 |
| Lat + AMT + Sex + FA | 7 | 302.66 | 6.769 | 0.034 | 0.018 |
| 0.889 | 28.37 |
| Reg + PDR + Sex + FA | 7 | 303.13 | 7.236 | 0.027 | 0.014 |
| 0.903 | 37.26 |
| Reg + AA + Sex + FA | 7 | 303.44 | 7.545 | 0.023 | 0.012 |
| 0.916 | 43.49 |
| AMT + Sex | 5 | 303.79 | 7.897 | 0.019 | 0.010 |
| 0.926 | 51.87 |
| Lat + PDR + Sex | 6 | 304.08 | 8.186 | 0.017 | 0.009 |
| 0.935 | 58.04 |
| Lat + AA + Sex | 6 | 304.09 | 8.195 | 0.017 | 0.009 |
| 0.944 | 58.15 |
| PDR + Sex | 5 | 304.14 | 8.245 | 0.016 | 0.009 |
| 0.952 | 61.7 |
| AA + Sex | 5 | 304.34 | 8.443 | 0.015 | 0.008 | −146.87 | 0.960 | 68.13 |
| Lat + RH + Sex | 6 | 304.43 | 8.539 | 0.014 | 0.007 | −145.79 | 0.968 | 69.02 |
| RH + Sex | 5 | 304.63 | 8.739 | 0.013 | 0.007 | −147.02 | 0.975 | 79 |
| Reg + RH + Sex | 6 | 305.29 | 9.392 | 0.009 | 0.005 | −146.22 | 0.979 | >100 |
| AMT + Sex + FA | 6 | 306.04 | 10.144 | 0.006 | 0.003 | −146.59 | 0.983 | >100 |
| Lat + PDR + Sex + FA | 7 | 306.37 | 10.480 | 0.005 | 0.003 | −145.62 | 0.986 | >100 |
| Lat + AA + Sex + FA | 7 | 306.38 | 10.489 | 0.005 | 0.003 | −145.62 | 0.988 | >100 |
| PDR + Sex + FA | 6 | 306.39 | 10.491 | 0.005 | 0.003 | −146.77 | 0.991 | >100 |
| AA + Sex + FA | 6 | 306.58 | 10.690 | 0.005 | 0.003 | −146.87 | 0.994 | >100 |
| Lat + RH + Sex + FA | 7 | 306.72 | 10.827 | 0.004 | 0.002 | −145.79 | 0.996 | >100 |
| RH + Sex + FA | 6 | 306.88 | 10.984 | 0.004 | 0.002 | −147.01 | 0.998 | >100 |
| Reg + RH + Sex + FA | 7 | 307.58 | 11.686 | 0.003 | 0.002 | −146.22 | 1.000 | >100 |
| Reg + AMT | 5 | 318.52 | 22.623 | 0.000 | 0.000 | −153.96 | 1.000 | >100 |
| Lat + AMT | 5 | 319.52 | 23.623 | 0.000 | 0.000 | −154.46 | 1.000 | >100 |
| FA | 4 | 320.32 | 24.426 | 0.000 | 0.000 | −155.96 | 1.000 | >100 |
| Reg + PDR | 5 | 321.04 | 25.144 | 0.000 | 0.000 | −155.22 | 1.000 | >100 |
| Reg + AA | 5 | 321.62 | 25.723 | 0.000 | 0.000 | −155.51 | 1.000 | >100 |
| Lat | 4 | 322.61 | 26.714 | 0.000 | 0.000 | −157.11 | 1.000 | >100 |
| Reg | 4 | 322.95 | 27.061 | 0.000 | 0.000 | −157.28 | 1.000 | >100 |
| Lat + PDR | 5 | 323.16 | 27.264 | 0.000 | 0.000 | −156.28 | 1.000 | >100 |
| Lat + AA | 5 | 323.23 | 27.340 | 0.000 | 0.000 | −156.32 | 1.000 | >100 |
| Lat + RH | 5 | 323.59 | 27.692 | 0.000 | 0.000 | −156.49 | 1.000 | >100 |
| AMT | 4 | 324.09 | 28.193 | 0.000 | 0.000 | −157.85 | 1.000 | >100 |
| PDR | 4 | 324.21 | 28.313 | 0.000 | 0.000 | −157.91 | 1.000 | >100 |
| AA | 4 | 324.42 | 28.523 | 0.000 | 0.000 | −158.01 | 1.000 | >100 |
| RH | 4 | 324.64 | 28.746 | 0.000 | 0.000 | −158.12 | 1.000 | >100 |
| Reg + RH | 5 | 325.08 | 29.186 | 0.000 | 0.000 |
| 1.000 | >100 |
AICc, Akaike information criterion scores; ΔAICc, change in AICc relative to the highest ranked model; AICwt, Akaike information criterion weight; AMT, Annual mean temperature; Cum.wt, cumulative weight; ER, evidence ratio; FA, forearm; K, number of parameters; Lat, latitude; LL, log‐likelihood; Reg, region; RH, relative humidity. Values for the strongest model are given in bold font at the top of the table.
Summary statistics for the most parsimonious linear mixed‐effects model (LMEs) fitted by REML on the RF of Rhinolophus damarensis
| Variable | Value | SE | DF |
|
|
|---|---|---|---|---|---|
| Intercept | 74.42854 | 2.904708 | 98 | 25.62342 | .0000 |
| AMT | 0.47396 | 0.140041 | 4 | 3.384406 | .0179 |
| Reg | 2.26557 | 0.630106 | 4 | 3.59554 | .0228 |
| Sex | 1.03812 | 0.201173 | 98 | 5.160326 | .0000 |
AMT, annual mean temperature; DF, degree of freedom; FA, forearm; Reg, region; SE, Standard error.
Figure 5Predicted effects of (a) annual mean temperature (AMT); (b) prey detection ranges (PDR); (c) atmospheric attenuation (AA); (d) relative humidity (RH); (e) sexual dimorphism and (f) region on RF variation in Rhinolophus damarensis. The gray‐shaded areas and error bars represent 95% confidence intervals
Results of multiple comparison tests of prey detection ranges among populations of Rhinolophus damarensis. Localities are listed in the order of increasing southern latitude. p Values are given in parentheses below the z′ values. Bold font indicates significant differences
| Locality | WondergatN | ArnhemN | Märcker | Soetfontein | Riemvasmaak | Orange river | Uintjiesberg |
|---|---|---|---|---|---|---|---|
| Wondergat | – |
|
| 2.3 | 1.2 |
|
|
| ( |
| (.4) | (1.0) |
|
| ||
| Arnhem |
| – |
| 1.2 | 2.8 | 0.9 |
|
|
|
| (1.0) | (.1) | (1.0) |
| ||
| Märcker |
|
| – |
|
|
| 1.0 |
|
|
|
|
|
| (1.0) | ||
| Soetfontein | 2.3 | 1.2 |
| – | 1.1 | 0.7 |
|
| (.4) | (1.0) |
| (1.0) | (1.0) |
| ||
| Riemvasmaak | 1.2 | 2.8 |
| 1.1 | – | 2.4 |
|
| (1.0) | (.1) |
| (1.0) | (.4) |
| ||
| Orange River |
| 0.8 |
| 0.7 | 2.4 | – |
|
|
| (1.0) |
| (1.0) | (.4) |
| ||
| Uintjiesberg |
|
| 1.0 |
|
|
| – |
|
|
| (1.0) |
|
|
|