Literature DB >> 28936535

8-Oxo-7,8-dihydro-2'-deoxyguanosine and abasic site tandem lesions are oxidation prone yielding hydantoin products that strongly destabilize duplex DNA.

Aaron M Fleming1, Cynthia J Burrows.   

Abstract

In DNA, 2'-deoxyguanosine (dG) is susceptible to oxidative modification by reactive oxygen species (ROS) yielding many products, one of which is 8-oxo-7,8-dihydro-2'-deoxyguanosine (dOG). Interestingly, dOG is stable but much more labile toward oxidation than dG, furnishing 5-guanidinohydantoin-2'-deoxyribose (dGh) that is favored in the duplex context or spiroiminodihydantoin-2'-deoxyribose (dSp) that is favored in the oxidation of single-stranded contexts. Previously, exposure of DNA to ionizing radiation found ∼50% of the dOG exists as a tandem lesion with an adjacent formamide site. The present work explored oxidation of dOG in a tandem lesion with a THF abasic site analog (F) that models the formamide on either the 5' or 3' side. When dOG was in a tandem lesion, both dGh and dSp were observed as oxidation products. The 5' versus 3' side in which F resided influenced the stereochemistry of the dSp formed. Further, tandem lesions with dOG were found to be up to two orders of magnitude more reactive to oxidation than dOG in an intact duplex. When dOG is in a tandem lesion it is up to fivefold more prone to formation of spermine cross-links during oxidation compared to dOG in an intact duplex. Lastly, dOG, dGh, and each dSp diastereomer were synthesized as part of a tandem lesion in a duplex DNA to establish that dOG tandem lesions decrease the thermal stability by 12-13 °C, while dGh or either dSp diastereomer in a tandem lesion decrease the stability by >20 °C. The biological consequences of these results are discussed.

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Year:  2017        PMID: 28936535      PMCID: PMC5636683          DOI: 10.1039/c7ob02096a

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  66 in total

Review 1.  Mechanisms of formation, genotoxicity, and mutation of guanine oxidation products.

Authors:  William L Neeley; John M Essigmann
Journal:  Chem Res Toxicol       Date:  2006-04       Impact factor: 3.739

Review 2.  Purine 5',8-cyclonucleoside lesions: chemistry and biology.

Authors:  Chryssostomos Chatgilialoglu; Carla Ferreri; Michael A Terzidis
Journal:  Chem Soc Rev       Date:  2011-01-11       Impact factor: 54.564

3.  Characterization of 2'-deoxyguanosine oxidation products observed in the Fenton-like system Cu(II)/H2O2/reductant in nucleoside and oligodeoxynucleotide contexts.

Authors:  Aaron M Fleming; James G Muller; Insun Ji; Cynthia J Burrows
Journal:  Org Biomol Chem       Date:  2011-03-29       Impact factor: 3.876

4.  Oxidised guanidinohydantoin (Ghox) and spiroiminodihydantoin (Sp) are major products of iron- and copper-mediated 8-oxo-7,8-dihydroguanine and 8-oxo-7,8-dihydro-2'-deoxyguanosine oxidation.

Authors:  Blánaid White; Maricar C Tarun; Nicholas Gathergood; James F Rusling; Malcolm R Smyth
Journal:  Mol Biosyst       Date:  2005-10-25

5.  Characterization of spiroiminodihydantoin as a product of one-electron oxidation of 8-Oxo-7,8-dihydroguanosine.

Authors:  W Luo; J G Muller; E M Rachlin; C J Burrows
Journal:  Org Lett       Date:  2000-03-09       Impact factor: 6.005

Review 6.  Oxidatively induced DNA damage and its repair in cancer.

Authors:  Miral Dizdaroglu
Journal:  Mutat Res Rev Mutat Res       Date:  2014-11-25       Impact factor: 5.657

7.  Reconciliation of chemical, enzymatic, spectroscopic and computational data to assign the absolute configuration of the DNA base lesion spiroiminodihydantoin.

Authors:  Aaron M Fleming; Anita M Orendt; Yanan He; Judy Zhu; Rina K Dukor; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2013-11-21       Impact factor: 15.419

8.  Structural context effects in the oxidation of 8-oxo-7,8-dihydro-2'-deoxyguanosine to hydantoin products: electrostatics, base stacking, and base pairing.

Authors:  Aaron M Fleming; James G Muller; Adrienne C Dlouhy; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2012-08-29       Impact factor: 15.419

9.  Formation of 13C-, 15N-, and 18O-labeled guanidinohydantoin from guanosine oxidation with singlet oxygen. Implications for structure and mechanism.

Authors:  Yu Ye; James G Muller; Wenchen Luo; Charles L Mayne; Anthony J Shallop; Roger A Jones; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2003-11-19       Impact factor: 15.419

10.  Quantitative analysis of the oxidative DNA lesion, 2,2-diamino-4-(2-deoxy-beta-D-erythro-pentofuranosyl)amino]-5(2H)-oxazolone (oxazolone), in vitro and in vivo by isotope dilution-capillary HPLC-ESI-MS/MS.

Authors:  Brock Matter; Danuta Malejka-Giganti; A Saari Csallany; Natalia Tretyakova
Journal:  Nucleic Acids Res       Date:  2006-10-04       Impact factor: 16.971

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  4 in total

1.  Interplay of Guanine Oxidation and G-Quadruplex Folding in Gene Promoters.

Authors:  Aaron M Fleming; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2020-01-09       Impact factor: 15.419

2.  Chemistry of ROS-mediated oxidation to the guanine base in DNA and its biological consequences.

Authors:  Aaron M Fleming; Cynthia J Burrows
Journal:  Int J Radiat Biol       Date:  2021-11-21       Impact factor: 2.694

3.  Endogenous oxidized DNA bases and APE1 regulate the formation of G-quadruplex structures in the genome.

Authors:  Shrabasti Roychoudhury; Suravi Pramanik; Hannah L Harris; Mason Tarpley; Aniruddha Sarkar; Gaelle Spagnol; Paul L Sorgen; Dipanjan Chowdhury; Vimla Band; David Klinkebiel; Kishor K Bhakat
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-13       Impact factor: 11.205

4.  Dependence of Fluorescence Quenching of CY3 Oligonucleotide Conjugates on the Oxidation Potential of the Stacking Base Pair.

Authors:  Jens Sobek; Ralph Schlapbach
Journal:  Molecules       Date:  2020-11-17       Impact factor: 4.411

  4 in total

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