Literature DB >> 28900015

Structure and function of Pif1 helicase.

Alicia K Byrd1, Kevin D Raney1.   

Abstract

Pif1 family helicases have multiple roles in the maintenance of nuclear and mitochondrial DNA in eukaryotes. Saccharomyces cerevisiae Pif1 is involved in replication through barriers to replication, such as G-quadruplexes and protein blocks, and reduces genetic instability at these sites. Another Pif1 family helicase in S. cerevisiae, Rrm3, assists in fork progression through replication fork barriers at the rDNA locus and tRNA genes. ScPif1 (Saccharomyces cerevisiae Pif1) also negatively regulates telomerase, facilitates Okazaki fragment processing, and acts with polymerase δ in break-induced repair. Recent crystal structures of bacterial Pif1 helicases and the helicase domain of human PIF1 combined with several biochemical and biological studies on the activities of Pif1 helicases have increased our understanding of the function of these proteins. This review article focuses on these structures and the mechanism(s) proposed for Pif1's various activities on DNA.
© 2017 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

Entities:  

Keywords:  DNA; G-quadruplex; enzyme kinetics; enzyme–substrate interactions; helicase; mtDNA

Mesh:

Substances:

Year:  2017        PMID: 28900015      PMCID: PMC5870758          DOI: 10.1042/BST20170096

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  111 in total

Review 1.  SF1 and SF2 helicases: family matters.

Authors:  Margaret E Fairman-Williams; Ulf-Peter Guenther; Eckhard Jankowsky
Journal:  Curr Opin Struct Biol       Date:  2010-04-22       Impact factor: 6.809

2.  Unzipping mechanism of the double-stranded DNA unwinding by a hexameric helicase: quantitative analysis of the rate of the dsDNA unwinding, processivity and kinetic step-size of the Escherichia coli DnaB helicase using rapid quench-flow method.

Authors:  Roberto Galletto; Maria J Jezewska; Wlodzimierz Bujalowski
Journal:  J Mol Biol       Date:  2004-10-08       Impact factor: 5.469

3.  DNA binding induces dimerization of Saccharomyces cerevisiae Pif1.

Authors:  Sergio Barranco-Medina; Roberto Galletto
Journal:  Biochemistry       Date:  2010-09-10       Impact factor: 3.162

Review 4.  The checkpoint response to replication stress.

Authors:  Dana Branzei; Marco Foiani
Journal:  DNA Repair (Amst)       Date:  2009-05-23

5.  A direct view of the complex multi-pathway folding of telomeric G-quadruplexes.

Authors:  Mikayel Aznauryan; Siri Søndergaard; Sofie L Noer; Birgit Schiøtt; Victoria Birkedal
Journal:  Nucleic Acids Res       Date:  2016-10-30       Impact factor: 16.971

Review 6.  Getting it done at the ends: Pif1 family DNA helicases and telomeres.

Authors:  Carly L Geronimo; Virginia A Zakian
Journal:  DNA Repair (Amst)       Date:  2016-05-16

7.  G-quadruplex recognition and remodeling by the FANCJ helicase.

Authors:  Colin G Wu; Maria Spies
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971

8.  DNA unwinding step-size of E. coli RecBCD helicase determined from single turnover chemical quenched-flow kinetic studies.

Authors:  Aaron L Lucius; Alessandro Vindigni; Razmic Gregorian; Janid A Ali; Andrew F Taylor; Gerald R Smith; Timothy M Lohman
Journal:  J Mol Biol       Date:  2002-11-29       Impact factor: 5.469

9.  PIF1 family DNA helicases suppress R-loop mediated genome instability at tRNA genes.

Authors:  Phong Lan Thao Tran; Thomas J Pohl; Chi-Fu Chen; Angela Chan; Sebastian Pott; Virginia A Zakian
Journal:  Nat Commun       Date:  2017-04-21       Impact factor: 14.919

10.  Rad53-Mediated Regulation of Rrm3 and Pif1 DNA Helicases Contributes to Prevention of Aberrant Fork Transitions under Replication Stress.

Authors:  Silvia Emma Rossi; Arta Ajazi; Walter Carotenuto; Marco Foiani; Michele Giannattasio
Journal:  Cell Rep       Date:  2015-09-24       Impact factor: 9.423

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  26 in total

1.  Pif1 helicase unfolding of G-quadruplex DNA is highly dependent on sequence and reaction conditions.

Authors:  Alicia K Byrd; Matthew R Bell; Kevin D Raney
Journal:  J Biol Chem       Date:  2018-09-26       Impact factor: 5.157

2.  The Drosophila melanogaster PIF1 Helicase Promotes Survival During Replication Stress and Processive DNA Synthesis During Double-Strand Gap Repair.

Authors:  Ece Kocak; Sarah Dykstra; Alexandra Nemeth; Catherine G Coughlin; Kasey Rodgers; Mitch McVey
Journal:  Genetics       Date:  2019-09-19       Impact factor: 4.562

3.  Structural and functional studies of SF1B Pif1 from Thermus oshimai reveal dimerization-induced helicase inhibition.

Authors:  Yang-Xue Dai; Wei-Fei Chen; Na-Nv Liu; Fang-Yuan Teng; Hai-Lei Guo; Xi-Miao Hou; Shuo-Xing Dou; Stephane Rety; Xu-Guang Xi
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

4.  Viral Satellites Exploit Phage Proteins to Escape Degradation of the Bacterial Host Chromosome.

Authors:  Amelia C McKitterick; Stephanie G Hays; Fatema-Tuz Johura; Munirul Alam; Kimberley D Seed
Journal:  Cell Host Microbe       Date:  2019-10-09       Impact factor: 21.023

5.  Pif1 Activity is Modulated by DNA Sequence and Structure.

Authors:  David G Nickens; Matthew L Bochman
Journal:  Biochemistry       Date:  2021-12-21       Impact factor: 3.162

6.  Unraveling gene content variation across eukaryotic giant viruses based on network analyses and host associations.

Authors:  Tsu-Wang Sun; Chuan Ku
Journal:  Virus Evol       Date:  2021-09-16

7.  Alignment of helicases on single-stranded DNA increases activity.

Authors:  Deniz Ozaslan; Alicia K Byrd; Binyam Belachew; Kevin D Raney
Journal:  Methods Enzymol       Date:  2022-04-26       Impact factor: 1.682

8.  Lysine acetylation regulates the activity of nuclear Pif1.

Authors:  Onyekachi E Ononye; Christopher W Sausen; Lata Balakrishnan; Matthew L Bochman
Journal:  J Biol Chem       Date:  2020-09-02       Impact factor: 5.157

9.  DNA-unwinding activity of Saccharomyces cerevisiae Pif1 is modulated by thermal stability, folding conformation, and loop lengths of G-quadruplex DNA.

Authors:  Lei Wang; Qing-Man Wang; Yi-Ran Wang; Xu-Guang Xi; Xi-Miao Hou
Journal:  J Biol Chem       Date:  2018-10-10       Impact factor: 5.157

Review 10.  The regulation and functions of DNA and RNA G-quadruplexes.

Authors:  Dhaval Varshney; Jochen Spiegel; Katherine Zyner; David Tannahill; Shankar Balasubramanian
Journal:  Nat Rev Mol Cell Biol       Date:  2020-04-20       Impact factor: 94.444

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