| Literature DB >> 28054998 |
Malose Jack Mphahlele1, Marole Maria Maluleka2, Lydia Rhyman3, Ponnadurai Ramasami4, Richard Mokome Mampa5.
Abstract
The structures of the mono- and the dihalogenated N-unsubstituted 2-aminobenzamides were characterized by means of the spectroscopic (¹H-NMR, UV-Vis, FT-IR, and FT-Raman) and X-ray crystallographic techniques complemented with a density functional theory (DFT) method. The hindered rotation of the C(O)-NH₂ single bond resulted in non-equivalence of the amide protons and therefore two distinct resonances of different chemical shift values in the ¹H-NMR spectra of these compounds were observed. 2-Amino-5-bromobenzamide (ABB) as a model confirmed the presence of strong intramolecular hydrogen bonds between oxygen and the amine hydrogen. However, intramolecular hydrogen bonding between the carbonyl oxygen and the amine protons was not observed in the solution phase due to a rapid exchange of these two protons with the solvent and fast rotation of the Ar-NH₂ single bond. XRD also revealed the ability of the amide unit of these compounds to function as a hydrogen bond donor and acceptor simultaneously to form strong intermolecular hydrogen bonding between oxygen of one molecule and the NH moiety of the amine or amide group of the other molecule and between the amine nitrogen and the amide hydrogen of different molecules. DFT calculations using the B3LYP/6-311++G(d,p) basis set revealed that the conformer (A) with oxygen and 2-amine on the same side predominates possibly due to the formation of a six-membered intramolecular ring, which is assisted by hydrogen bonding as observed in the single crystal XRD structure.Entities:
Keywords: 1H-NMR spectra; DFT; XRD; halogenated 2-aminobenzamides; vibrational spectra
Mesh:
Substances:
Year: 2017 PMID: 28054998 PMCID: PMC6155760 DOI: 10.3390/molecules22010083
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Scheme 1Halogenation of 2-aminobenzamide (AB). Reagents & conditions: (i) NBS, CH3CN, RT, 0.5 h (X = Br) or NIS, AcOH, RT, 1 h (X = I); (ii) NIS, AcOH, RT, 1 h; (iii) NBS (2 equiv.), AcOH, RT, 2 h.
Figure 1The 2D NOESY spectrum of ABB in DMSO-d6 at 400 MHz.
Figure 2Geometry optimized conformers (A) and (B) of ABB in the solution phase.
Electronic energy of the conformers of the four studied compounds and their energy difference in the gas phase and in DMSO.
| −3030.994480 | −3029.988460 | 15.81 | −3030.006409 | −3030.002821 | 9.42 | |
| −467.228178 | −467.222193 | 15.72 | −467.240222 | −467.236665 | 9.34 | |
| −5603.535596 | −5603.529423 | 16.21 | −5603.546023 | −5603.541927 | 10.75 | |
| −3040.768917 | −3040.762660 | 16.43 | −3040.779561 | −3040.775398 | 10.93 | |
| −3029.897495 | −3029.891223 | 16.47 | −3029.909949 | −3029.906365 | 9.41 | |
| −467.132463 | −467.126178 | 16.50 | −467.144972 | −467.141348 | 9.51 | |
| −5603.451831 | −5603.445371 | 16.96 | −5603.462814 | −5603.458735 | 10.71 | |
| −3040.686568 | −3040.679861 | 17.61 | −3040.697530 | −3040.693577 | 10.38 | |
| −3030.010097 | −3030.004505 | 14.68 | −3030.022089 | −3030.018918 | 8.32 | |
| −467.244209 | −467.238646 | 14.61 | −467.256320 | −467.253167 | 8.28 | |
| −5603.554266 | −5603.548575 | 14.94 | −5603.564784 | −5603.561176 | 9.47 | |
| −3040.788022 | −3040.782271 | 15.10 | −3040.798761 | −3040.795110 | 9.58 | |
| −3029.912976 | −3029.907178 | 15.22 | −3029.925554 | −3029.922248 | 8.68 | |
| −467.148366 | −467.142508 | 15.38 | −467.160869 | −467.157580 | 8.64 | |
| −5603.470457 | −5603.464475 | 15.71 | −5603.481694 | −5603.477920 | 9.91 | |
| −3040.705570 | −3040.699515 | 15.90 | −3040.716715 | −3040.713097 | 9.50 | |
The computed GIAO 1H-NMR chemical shifts of conformers (A) and (B) for ABB, numbering as per Figure 2.
| ABB | ||
|---|---|---|
| Conformer (A) | Conformer (B) | |
| 7.02 | 7.11 | |
| 7.46 | 7.51 | |
| 7.73 | 8.05 | |
| 5.17 | 5.49 | |
| 5.76 | 6.30 | |
| 4.30 | 4.06 | |
| 7.45 | 4.18 | |
Figure 3UV-Vis spectra of ABB, AIB, ABBB, and ABIB in DMSO (conc. = 1 × 10−6 mol/L).
Figure 4Simulated UV-Vis spectra of ABB, AIB, ABBB, and ABIB in DMSO.
Calculated electronic parameters of the two conformers of 2-aminobenzamides in DMSO.
| λ (nm) | λ (eV) | Oscillator Strength | Assignment | % Contribution |
|---|---|---|---|---|
| 216.6 | 5.72 | 0.1174 | HOMO-3→LUMO | 31.6 |
| 330.2 | 3.75 | 0.0993 | HOMO→LUMO | 96.8 |
| 213.6 | 5.80 | 0.2280 | HOMO-4→LUMO | 21.0 |
| 333.0 | 3.72 | 0.0840 | HOMO→LUMO | 93.8 |
| 234.9 | 5.28 | 0.3589 | HOMO-1→LUMO | 44.7 |
| 334.7 | 3.70 | 0.1252 | HOMO→LUMO | 96.7 |
| 243.1 | 5.10 | 0.3372 | HOMO→LUMO+2 | 65.7 |
| 334.9 | 3.70 | 0.1186 | HOMO→LUMO | 89.4 |
| 217.9 | 5.69 | 0.5301 | HOMO-2→LUMO | 35.2 |
| 311.0 | 3.99 | 0.0800 | HOMO→LUMO | 95.2 |
| 218.5 | 5.68 | 0.4237 | HOMO-4→LUMO | 24.5 |
| 313.9 | 3.95 | 0.0758 | HOMO→LUMO | 92.5 |
| 273.7 | 4.53 | 0.0758 | HOMO-3→LUMO | 8.4 |
| 390.9 | 3.17 | 1.5953 | HOMO→LUMO | 98.5 |
| 239.1 | 5.19 | 0.4646 | HOMO→LUMO+2 | 43.2 |
| 316.3 | 3.92 | 0.0936 | HOMO→LUMO | 69.6 |
Figure 5The HOMO and LUMO surfaces of ABB in DMSO.
The experimental IR frequencies for compounds ABB, AIB, ABBB, and ABIB.
| Compound | IR Frequencies |
|---|---|
| 508, 534, 581, 652, 694, 818, 857, 1068, 1162, 1257, 1366, 1476, 1538, 1600, 1672, 3161, 3281, 3355, 3395 | |
| 505, 537, 582, 657, 697, 798, 892, 1078, 1159, 1245, 1297, 1390, 1478, 1540, 1605, 1673, 3157, 3287, 3347, 3395 | |
| 413, 536, 584, 641, 800, 864, 1047, 1127, 1240, 1382, 1408, 1440, 1529, 1561, 1598, 1638, 3186, 3317, 3369, 3412 | |
| 413, 542, 644, 805, 873, 1054, 1130, 1240, 1276, 1386, 1414, 1451, 1536, 1567, 1602, 1641, 3180, 3326, 3368, 3424 |
Figure 6The Oak Ridge Thermal Ellipsoid Plot (ORTEP) diagram of ABB showing crystallographic labelling.
The crystal data and structure refinement for ABB.
| CDCC | 1511089 | |
|---|---|---|
| Empirical formula | C7H7BrN2O | |
| Formula weight | 215.06 | |
| Crystal system | Monoclinic | |
| Space group | C2/c | |
| Unit cell dimensions | α = 90° | |
| β = 91.4270(10)° | ||
| γ = 90° | ||
| Volume | 1537.52(6) Å3 | |
| Z | 8 | |
| Density (calculated) | 1.858 Mg/m3 | |
| Absorption coefficient | 5.285 mm−1 | |
| F(000) | 848 | |
| Crystal size | 0.44 × 0.19 × 0.06 mm3 | |
| Theta range for data collection | 1.34 to 27.99° | |
| Index ranges | −40 < h < 39, −8 < k < 8, −10 < l < 10 | |
| Reflections collected | 11742 | |
| Independent reflections | 1865 [R(int) = 0.0970] | |
| Completeness to theta = 27.99° | 99.9% | |
| Absorption correction | Integration | |
| Max. and min. Transmission | 0.7422 and 0.2045 | |
| Refinement method | Full-matrix least-squares on F2 | |
| Data/restraints/parameters | 1865/0/116 | |
| Goodness-of-fit on F2 | 1.018 | |
| Final R indices [I > 2sigma(I)] | R1 = 0.0327, wR2 = 0.0854 | |
| R indices (all data) | R1 = 0.0408, wR2 = 0.0879 | |
| Largest diff. peak and hole | 1.096 and −0.391 e.Å−3 |
Figure 7The X-ray crystal structure of ABB showing intra- and intermolecular hydrogen bonding.