Literature DB >> 29235176

Roles of elusive translational GTPases come to light and inform on the process of ribosome biogenesis in bacteria.

Michelle R Gibbs1, Kurt Fredrick1.   

Abstract

Protein synthesis relies on several translational GTPases (trGTPases), related proteins that couple the hydrolysis of GTP to specific molecular events on the ribosome. Most bacterial trGTPases, including IF2, EF-Tu, EF-G and RF3, play well-known roles in translation. The cellular functions of LepA (also termed EF4) and BipA (also termed TypA), conversely, have remained enigmatic. Recent studies provide compelling in vivo evidence that LepA and BipA function in biogenesis of the 30S and 50S subunit respectively. These findings have important implications for ribosome biogenesis in bacteria. Because the GTPase activity of each of these proteins depends on interactions with both ribosomal subunits, some portion of 30S and 50S assembly must occur in the context of the 70S ribosome. In this review, we introduce the trGTPases of bacteria, describe the new functional data on LepA and BipA, and discuss the how these findings shape our current view of ribosome biogenesis in bacteria.
© 2017 John Wiley & Sons Ltd.

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Year:  2017        PMID: 29235176      PMCID: PMC5796857          DOI: 10.1111/mmi.13895

Source DB:  PubMed          Journal:  Mol Microbiol        ISSN: 0950-382X            Impact factor:   3.501


  94 in total

1.  A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits.

Authors:  Bethany S Strunk; Megan N Novak; Crystal L Young; Katrin Karbstein
Journal:  Cell       Date:  2012-07-06       Impact factor: 41.582

2.  How initiation factors tune the rate of initiation of protein synthesis in bacteria.

Authors:  Ayman Antoun; Michael Y Pavlov; Martin Lovmar; Måns Ehrenberg
Journal:  EMBO J       Date:  2006-05-25       Impact factor: 11.598

Review 3.  Assembly of bacterial ribosomes.

Authors:  Zahra Shajani; Michael T Sykes; James R Williamson
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

4.  The pathway to GTPase activation of elongation factor SelB on the ribosome.

Authors:  Niels Fischer; Piotr Neumann; Lars V Bock; Cristina Maracci; Zhe Wang; Alena Paleskava; Andrey L Konevega; Gunnar F Schröder; Helmut Grubmüller; Ralf Ficner; Marina V Rodnina; Holger Stark
Journal:  Nature       Date:  2016-11-14       Impact factor: 49.962

5.  Structure-based energetics of mRNA decoding on the ribosome.

Authors:  Priyadarshi Satpati; Johan Sund; Johan Aqvist
Journal:  Biochemistry       Date:  2014-03-05       Impact factor: 3.162

6.  The conserved GTPase LepA contributes mainly to translation initiation in Escherichia coli.

Authors:  Rohan Balakrishnan; Kenji Oman; Shinichiro Shoji; Ralf Bundschuh; Kurt Fredrick
Journal:  Nucleic Acids Res       Date:  2014-11-06       Impact factor: 16.971

7.  GTP hydrolysis by IF2 guides progression of the ribosome into elongation.

Authors:  R Andrew Marshall; Colin Echeverría Aitken; Joseph D Puglisi
Journal:  Mol Cell       Date:  2009-07-10       Impact factor: 17.970

8.  Features of the formate dehydrogenase mRNA necessary for decoding of the UGA codon as selenocysteine.

Authors:  F Zinoni; J Heider; A Böck
Journal:  Proc Natl Acad Sci U S A       Date:  1990-06       Impact factor: 11.205

9.  Modular Assembly of the Bacterial Large Ribosomal Subunit.

Authors:  Joseph H Davis; Yong Zi Tan; Bridget Carragher; Clinton S Potter; Dmitry Lyumkis; James R Williamson
Journal:  Cell       Date:  2016-12-01       Impact factor: 41.582

10.  The mechanism for activation of GTP hydrolysis on the ribosome.

Authors:  Rebecca M Voorhees; T Martin Schmeing; Ann C Kelley; V Ramakrishnan
Journal:  Science       Date:  2010-11-05       Impact factor: 47.728

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  14 in total

1.  Alterations in the ribosomal protein bL12 of E. coli affecting the initiation, elongation and termination of protein synthesis.

Authors:  Adam D Younkin; Steven T Gregory; Michael O'Connor
Journal:  Biochimie       Date:  2020-06-20       Impact factor: 4.079

2.  Diverse Aquatic Animal Matrices Play a Key Role in Survival and Potential Virulence of Non-O1/O139 Vibrio cholerae Isolates.

Authors:  Lili Yan; Yinzhe Jin; Beiyu Zhang; Yingwei Xu; Xu Peng; Si Qin; Lanming Chen
Journal:  Front Microbiol       Date:  2022-06-21       Impact factor: 6.064

Review 3.  Translational regulation of environmental adaptation in bacteria.

Authors:  Rodney Tollerson; Michael Ibba
Journal:  J Biol Chem       Date:  2020-06-09       Impact factor: 5.486

4.  Complex Evolutionary History of Translation Elongation Factor 2 and Diphthamide Biosynthesis in Archaea and Parabasalids.

Authors:  Adrienne B Narrowe; Anja Spang; Courtney W Stairs; Eva F Caceres; Brett J Baker; Christopher S Miller; Thijs J G Ettema
Journal:  Genome Biol Evol       Date:  2018-09-01       Impact factor: 3.416

5.  Multicopy Suppressor Analysis of Strains Lacking Cytoplasmic Peptidyl-Prolyl cis/trans Isomerases Identifies Three New PPIase Activities in Escherichia coli That Includes the DksA Transcription Factor.

Authors:  Pawel Wojtkiewicz; Daria Biernacka; Patrycja Gorzelak; Anna Stupak; Gracjana Klein; Satish Raina
Journal:  Int J Mol Sci       Date:  2020-08-14       Impact factor: 5.923

6.  Pseudomonas putida Responds to the Toxin GraT by Inducing Ribosome Biogenesis Factors and Repressing TCA Cycle Enzymes.

Authors:  Andres Ainelo; Rando Porosk; Kalle Kilk; Sirli Rosendahl; Jaanus Remme; Rita Hõrak
Journal:  Toxins (Basel)       Date:  2019-02-09       Impact factor: 4.546

7.  Translation initiation factor IF2 contributes to ribosome assembly and maturation during cold adaptation.

Authors:  Anna Brandi; Lolita Piersimoni; Naser Aliye Feto; Roberto Spurio; Jean-Hervé Alix; Frank Schmidt; Claudio O Gualerzi
Journal:  Nucleic Acids Res       Date:  2019-05-21       Impact factor: 16.971

8.  A comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS.

Authors:  Mukul K Midha; Ulrike Kusebauch; David Shteynberg; Charu Kapil; Samuel L Bader; Panga Jaipal Reddy; David S Campbell; Nitin S Baliga; Robert L Moritz
Journal:  Sci Data       Date:  2020-11-12       Impact factor: 6.444

9.  ABCF ATPases Involved in Protein Synthesis, Ribosome Assembly and Antibiotic Resistance: Structural and Functional Diversification across the Tree of Life.

Authors:  Victoriia Murina; Marje Kasari; Hiraku Takada; Mariliis Hinnu; Chayan Kumar Saha; James W Grimshaw; Takahiro Seki; Michael Reith; Marta Putrinš; Tanel Tenson; Henrik Strahl; Vasili Hauryliuk; Gemma Catherine Atkinson
Journal:  J Mol Biol       Date:  2018-12-28       Impact factor: 5.469

Review 10.  The Impact of the Stringent Response on TRAFAC GTPases and Prokaryotic Ribosome Assembly.

Authors:  Daniel J Bennison; Sophie E Irving; Rebecca M Corrigan
Journal:  Cells       Date:  2019-10-24       Impact factor: 6.600

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