Literature DB >> 28887770

Optimization of 1H decoupling eliminates sideband artifacts in 3D TROSY-based triple resonance experiments.

Youlin Xia1, Paolo Rossi1, Marco Tonelli2, Chengdong Huang1, Charalampos G Kalodimos3, Gianluigi Veglia4,5.   

Abstract

TROSY-based triple resonance experiments are essential for protein backbone assignment of large biomolecular systems by solution NMR spectroscopy. In a survey of the current Bruker pulse sequence library for TROSY-based experiments we found that several sequences were plagued by artifacts that affect spectral quality and hamper data analysis. Specifically, these experiments produce sidebands in the 13C(t 1) dimension with inverted phase corresponding to 1HN resonance frequencies, with approximately 5% intensity of the parent 13C crosspeaks. These artifacts originate from the modulation of the 1HN frequency onto the resonance frequency of 13Cα and/or 13Cβ and are due to 180° pulses imperfections used for 1H decoupling during the 13C(t 1) evolution period. These sidebands can become severe for CAi, CAi-1 and/or CBi, CBi-1 correlation experiments such as TROSY-HNCACB. Here, we implement three alternative decoupling strategies that suppress these artifacts and, depending on the scheme employed, boost the sensitivity up to 14% on Bruker spectrometers. A class of comparable Agilent/Varian pulse sequences that use WALTZ16 1H decoupling can also be improved by this method resulting in up to 60-80% increase in sensitivity.

Entities:  

Keywords:  Backbone assignment; NMR; Pulse Imperfection; Sideband artifacts; TROSY-based triple resonance

Mesh:

Substances:

Year:  2017        PMID: 28887770      PMCID: PMC5693675          DOI: 10.1007/s10858-017-0133-6

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  9 in total

1.  Protein dynamics measurements by TROSY-based NMR experiments.

Authors:  G Zhu; Y Xia; L K Nicholson; K H Sze
Journal:  J Magn Reson       Date:  2000-04       Impact factor: 2.229

2.  Rapid pulse length determination in high-resolution NMR.

Authors:  Peter S C Wu; Gottfried Otting
Journal:  J Magn Reson       Date:  2005-09       Impact factor: 2.229

3.  BEST-TROSY experiments for time-efficient sequential resonance assignment of large disordered proteins.

Authors:  Zsofia Solyom; Melanie Schwarten; Leonhard Geist; Robert Konrat; Dieter Willbold; Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2013-02-24       Impact factor: 2.835

4.  Measurement of 3hJNC' connectivities across hydrogen bonds in a 30 kDa protein.

Authors:  Y X Wang; J Jacob; F Cordier; P Wingfield; S J Stahl; S Lee-Huang; D Torchia; S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1999-06       Impact factor: 2.835

5.  TROSY NMR with partially deuterated proteins.

Authors:  A Eletsky; A Kienhöfer; K Pervushin
Journal:  J Biomol NMR       Date:  2001-06       Impact factor: 2.835

6.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

7.  Improved 1HN-detected triple resonance TROSY-based experiments.

Authors:  D Yang; L E Kay
Journal:  J Biomol NMR       Date:  1999-01       Impact factor: 2.835

8.  A TROSY CPMG sequence for characterizing chemical exchange in large proteins.

Authors:  J P Loria; M Rance; A G Palmer
Journal:  J Biomol NMR       Date:  1999-10       Impact factor: 2.835

9.  TROSY in triple-resonance experiments: new perspectives for sequential NMR assignment of large proteins.

Authors:  M Salzmann; K Pervushin; G Wider; H Senn; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-10       Impact factor: 11.205

  9 in total
  1 in total

1.  Enhancing the sensitivity of multidimensional NMR experiments by using triply-compensated π pulses.

Authors:  Youlin Xia; Paolo Rossi; Manu V Subrahmanian; Chengdong Huang; Tamjeed Saleh; Cristina Olivieri; Charalampos G Kalodimos; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2017-11-21       Impact factor: 2.835

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.