| Literature DB >> 28813480 |
Dong Hoon Shin1,2, Chang Seok Oh1, Jong Ha Hong1, Yusu Kim1, Soong Deok Lee2,3, Eunju Lee4.
Abstract
While atherosclerotic cardiovascular disease (ASCVD) is known to be common among modern people exposed to various risk factors, recent paleopathological studies have shown that it affected ancient populations much more frequently than expected. In 2010, we investigated a 17th century Korean female mummy with presumptive ASCVD signs. Although the resulting report was a rare and invaluable conjecture on the disease status of an ancient East Asian population, the diagnosis had been based only on anatomical and radiological techniques, and so could not confirm the existence of ASCVD in the mummy. In the present study, we thus performed a paleogenetic analysis to supplement the previous conventional diagnosis of ASCVD. In aDNA extracted from the same Korean mummy, we identified the risk alleles of seven different SNPs (rs5351, rs10757274, rs2383206, rs2383207, rs10757278, rs4380028 and rs1333049) that had already been revealed to be the major risk loci of ASCVD in East Asian populations. The reliability of this study could be enhanced by cross-validation using two different analyses: Sanger and SNaPshot techniques. We were able to establish that the 17th century Korean female had a strong genetic predisposition to increased risk of ASCVD. The current paleogenetic diagnosis, the first of its kind outside Europe, re-confirms its utility as an adjunct modality for confirmatory diagnosis of ancient ASCVD.Entities:
Mesh:
Year: 2017 PMID: 28813480 PMCID: PMC5559090 DOI: 10.1371/journal.pone.0183098
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Mungyeong mummy examined in this study.
PCR primer sets and SNP analysis results by Sanger sequencing.
| Related Disease | dbSNP | Primer sequence (5' → 3') | Product size (bp) | AT(℃) | SNP | Risk allele | Allele | Primer reference | |
|---|---|---|---|---|---|---|---|---|---|
| Atherosclerosis | rs5351 | Forward | 74 | 58 | A/G | A | 10A | Keller et al., 2014 | |
| Reverse | |||||||||
| CAD/CA/CHD | rs10757274 | Forward | 82 | 58 | A/G | G | 9G,1A | Keller et al., 2014 | |
| Reverse | |||||||||
| CAD/CA | rs2383206 | Forward | 78 | 58 | A/G | G | 9G | Keller et al., 2014 | |
| Reverse | |||||||||
| CA/MI | rs23832074 | Forward | 121 | 58 | A/G | G | 10G | this study | |
| Reverse | |||||||||
| CA/MI | rs107572784 | Forward | 83 | 58 | A/G | G | 10G | this study | |
| Reverse | |||||||||
| CAD/CA/MI | rs6903956 | Forward | 127 | 58 | A/G | A | 8G | this study | |
| Reverse | |||||||||
| CAD | rs4380028 | Forward | 116 | 58 | C/T | C | 9C | this study | |
| Reverse | |||||||||
| CAD | rs109535417 | Forward | 150 | 58 | C/T | C | 9T | this study | |
| Reverse | |||||||||
| CAD | rs9748198, | Forward | 163 | 53 | C/T | T | 10C | this study | |
| Reverse | |||||||||
| CAD/CA/CAC | rs1333049 | Forward | 139 | 56 | C/G | C | 8C | this study | |
| Reverse | |||||||||
CAD, coronary artery disease; CA, Coronary atherosclerosis; CHD, coronary heart disease; MI, Myocardial infarction; AT, annealing temperature. SNP, single nucleotide polymorphism; AT, annealing temperature. SNP references
1Yasuda et al., 2007
2Xie et al. 2011
3Keller et al., 2012
4Shen et al., 2008
5Wang et al., 2011
6Guo et al. 2012
7C4D genetics consortium, 2011
8Zhou et al., 2012
9Dechamethakun et al., 2014
10Hinohara et al., 2008.
SNP analysis of Mungyeong mummy DNA by SNaPshot Kit.
| rs5351 | A/G | A | A | A | |
| A/G | G | G | G | ||
| A/G | G | G | G | ||
| rs2383207 | A/G | G | G | G | |
| A/G | G | G | G | ||
| A/G | A | G | G | ||
| rs4380028 | C/T | C | C | C | |
| rs10953541 | C/T | C | T | T | |
| C/T | T | C | C | ||
| rs1333049 | C/G | C | C | C |
*Reverse direction
Fig 2PCR amplification of DNA extracted from Mungyeong mummy sample.
Amplicons associated with each SNP site were observed (indicated by arrows). L, 50bp ladder; MG, Mungyeong mummy; NC, negative extraction control.
Fig 3The genotyping results analyzed by the SNaPshot kit were identical to those of Sanger sequencing.
Some of the results were shown as antisense allele because SBE primer was made in a reverse direction.
Comparison of mtDNA hypervariable region from Mungyeong mummy and researcher samples.
| Subjects | Hypervariable region | |||
|---|---|---|---|---|
| HVI (15991–16390) | HVII (034–369) | HVIII (423–548) | ||
| Lab A | 16223T 16362C | 73G 263G 315.1C | 489C | |
| Lab B | 16223T 16362C | 73G 263G 315.1C | 489C | |
| Researchers | 1 | 16172C 16174T 16223T 16362C | 73G 263G 309.1C 315.1C | |
| 2 | 16183C 16189C 16220C 16254G 16298C 16362C | 73G 249d 263G 315.1C | ||
| 3 | 16129A 16182C 16183C 16189C 16232A 16249C 16304C 16311C 16344T | 73G 152C 249d 263G 315.1C | ||
acloning
bdirect sequencing
Fig 4PCR amplification for mtDNA hypervariable region of Mungyeong mummy.
Electrophoresis of Lab A and B showed the same amplified bands (PS1, 267 bp; PS2, 267 bp; PS3, 226 bp; PS4, 235bp; PS5, 167bp). L, 50bp ladder; MG, Mungyeong mummy; NC, negative extraction control.