Literature DB >> 22426219

New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing.

Andreas Keller1, Angela Graefen, Markus Ball, Mark Matzas, Valesca Boisguerin, Frank Maixner, Petra Leidinger, Christina Backes, Rabab Khairat, Michael Forster, Björn Stade, Andre Franke, Jens Mayer, Jessica Spangler, Stephen McLaughlin, Minita Shah, Clarence Lee, Timothy T Harkins, Alexander Sartori, Andres Moreno-Estrada, Brenna Henn, Martin Sikora, Ornella Semino, Jacques Chiaroni, Siiri Rootsi, Natalie M Myres, Vicente M Cabrera, Peter A Underhill, Carlos D Bustamante, Eduard Egarter Vigl, Marco Samadelli, Giovanna Cipollini, Jan Haas, Hugo Katus, Brian D O'Connor, Marc R J Carlson, Benjamin Meder, Nikolaus Blin, Eckart Meese, Carsten M Pusch, Albert Zink.   

Abstract

The Tyrolean Iceman, a 5,300-year-old Copper age individual, was discovered in 1991 on the Tisenjoch Pass in the Italian part of the Ötztal Alps. Here we report the complete genome sequence of the Iceman and show 100% concordance between the previously reported mitochondrial genome sequence and the consensus sequence generated from our genomic data. We present indications for recent common ancestry between the Iceman and present-day inhabitants of the Tyrrhenian Sea, that the Iceman probably had brown eyes, belonged to blood group O and was lactose intolerant. His genetic predisposition shows an increased risk for coronary heart disease and may have contributed to the development of previously reported vascular calcifications. Sequences corresponding to ~60% of the genome of Borrelia burgdorferi are indicative of the earliest human case of infection with the pathogen for Lyme borreliosis.

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Year:  2012        PMID: 22426219     DOI: 10.1038/ncomms1701

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  42 in total

1.  Fine characterization of the Iceman's mtDNA haplogroup.

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2.  The retrieval of ancient human DNA sequences.

Authors:  O Handt; M Krings; R H Ward; S Pääbo
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3.  Seroprevalence of antibodies to microorganisms known to cause arterial and myocardial damage in patients with or without coronary stenosis.

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4.  A common variant at 9p21 is associated with sudden and arrhythmic cardiac death.

Authors:  Christopher Newton-Cheh; Nancy R Cook; Martin VanDenburgh; Eric B Rimm; Paul M Ridker; Christine M Albert
Journal:  Circulation       Date:  2009-11-09       Impact factor: 29.690

5.  A single SNP in an evolutionary conserved region within intron 86 of the HERC2 gene determines human blue-brown eye color.

Authors:  Richard A Sturm; David L Duffy; Zhen Zhen Zhao; Fabio P N Leite; Mitchell S Stark; Nicholas K Hayward; Nicholas G Martin; Grant W Montgomery
Journal:  Am J Hum Genet       Date:  2008-01-24       Impact factor: 11.025

6.  Ancient DNA from European early neolithic farmers reveals their near eastern affinities.

Authors:  Wolfgang Haak; Oleg Balanovsky; Juan J Sanchez; Sergey Koshel; Valery Zaporozhchenko; Christina J Adler; Clio S I Der Sarkissian; Guido Brandt; Carolin Schwarz; Nicole Nicklisch; Veit Dresely; Barbara Fritsch; Elena Balanovska; Richard Villems; Harald Meller; Kurt W Alt; Alan Cooper
Journal:  PLoS Biol       Date:  2010-11-09       Impact factor: 8.029

7.  Heteroplasmic mitochondrial DNA mutations in normal and tumour cells.

Authors:  Yiping He; Jian Wu; Devin C Dressman; Christine Iacobuzio-Donahue; Sanford D Markowitz; Victor E Velculescu; Luis A Diaz; Kenneth W Kinzler; Bert Vogelstein; Nickolas Papadopoulos
Journal:  Nature       Date:  2010-03-03       Impact factor: 49.962

8.  Forces shaping the fastest evolving regions in the human genome.

Authors:  Katherine S Pollard; Sofie R Salama; Bryan King; Andrew D Kern; Tim Dreszer; Sol Katzman; Adam Siepel; Jakob S Pedersen; Gill Bejerano; Robert Baertsch; Kate R Rosenbloom; Jim Kent; David Haussler
Journal:  PLoS Genet       Date:  2006-08-23       Impact factor: 5.917

9.  The 9p21 susceptibility locus for coronary artery disease and the severity of coronary atherosclerosis.

Authors:  Suet Nee Chen; Christie M Ballantyne; Antonio M Gotto; Ali J Marian
Journal:  BMC Cardiovasc Disord       Date:  2009-01-27       Impact factor: 2.298

10.  The Human Gene Mutation Database: 2008 update.

Authors:  Peter D Stenson; Matthew Mort; Edward V Ball; Katy Howells; Andrew D Phillips; Nick St Thomas; David N Cooper
Journal:  Genome Med       Date:  2009-01-22       Impact factor: 11.117

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  158 in total

1.  Beyond the palaeomicrobiology.

Authors:  Helena Seth-Smith
Journal:  Nat Rev Microbiol       Date:  2012-03-12       Impact factor: 60.633

2.  Deep History of East Asian Populations Revealed Through Genetic Analysis of the Ainu.

Authors:  Choongwon Jeong; Shigeki Nakagome; Anna Di Rienzo
Journal:  Genetics       Date:  2015-10-23       Impact factor: 4.562

3.  Neolithic and Bronze Age migration to Ireland and establishment of the insular Atlantic genome.

Authors:  Lara M Cassidy; Rui Martiniano; Eileen M Murphy; Matthew D Teasdale; James Mallory; Barrie Hartwell; Daniel G Bradley
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-28       Impact factor: 11.205

4.  Distinguishing the co-ancestries of haplogroup G Y-chromosomes in the populations of Europe and the Caucasus.

Authors:  Siiri Rootsi; Natalie M Myres; Alice A Lin; Mari Järve; Roy J King; Ildus Kutuev; Vicente M Cabrera; Elza K Khusnutdinova; Kärt Varendi; Hovhannes Sahakyan; Doron M Behar; Rita Khusainova; Oleg Balanovsky; Elena Balanovska; Pavao Rudan; Levon Yepiskoposyan; Ardeshir Bahmanimehr; Shirin Farjadian; Alena Kushniarevich; Rene J Herrera; Viola Grugni; Vincenza Battaglia; Carmela Nici; Francesca Crobu; Sena Karachanak; Baharak Hooshiar Kashani; Massoud Houshmand; Mohammad H Sanati; Draga Toncheva; Antonella Lisa; Ornella Semino; Jacques Chiaroni; Julie Di Cristofaro; Richard Villems; Toomas Kivisild; Peter A Underhill
Journal:  Eur J Hum Genet       Date:  2012-05-16       Impact factor: 4.246

5.  Archaic humans: Four makes a party.

Authors:  Ewan Birney; Jonathan K Pritchard
Journal:  Nature       Date:  2013-12-18       Impact factor: 49.962

6.  Paleoproteomic study of the Iceman's brain tissue.

Authors:  Frank Maixner; Thorsten Overath; Dennis Linke; Marek Janko; Gea Guerriero; Bart H J van den Berg; Bjoern Stade; Petra Leidinger; Christina Backes; Marta Jaremek; Benny Kneissl; Benjamin Meder; Andre Franke; Eduard Egarter-Vigl; Eckart Meese; Andreas Schwarz; Andreas Tholey; Albert Zink; Andreas Keller
Journal:  Cell Mol Life Sci       Date:  2013-06-06       Impact factor: 9.261

7.  Ancient DNA and human history.

Authors:  Montgomery Slatkin; Fernando Racimo
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-06       Impact factor: 11.205

Review 8.  Ancient population genomics and the study of evolution.

Authors:  M Parks; S Subramanian; C Baroni; M C Salvatore; G Zhang; C D Millar; D M Lambert
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-01-19       Impact factor: 6.237

9.  Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal.

Authors:  Pontus Skoglund; Bernd H Northoff; Michael V Shunkov; Anatoli P Derevianko; Svante Pääbo; Johannes Krause; Mattias Jakobsson
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-27       Impact factor: 11.205

10.  Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans.

Authors:  Paul Brotherton; Wolfgang Haak; Jennifer Templeton; Guido Brandt; Julien Soubrier; Christina Jane Adler; Stephen M Richards; Clio Der Sarkissian; Robert Ganslmeier; Susanne Friederich; Veit Dresely; Mannis van Oven; Rosalie Kenyon; Mark B Van der Hoek; Jonas Korlach; Khai Luong; Simon Y W Ho; Lluis Quintana-Murci; Doron M Behar; Harald Meller; Kurt W Alt; Alan Cooper
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

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