Literature DB >> 28801535

Expansion of the ISWI chromatin remodeler family with new active complexes.

Mariano Oppikofer1, Tianyi Bai2, Yutian Gan3, Benjamin Haley4, Peter Liu3, Wendy Sandoval3, Claudio Ciferri2, Andrea G Cochran1.   

Abstract

ISWI chromatin remodelers mobilize nucleosomes to control DNA accessibility. Complexes isolated to date pair one of six regulatory subunits with one of two highly similar ATPases. However, we find that each endogenously expressed ATPase co-purifies with every regulatory subunit, substantially increasing the diversity of ISWI complexes, and we additionally identify BAZ2B as a novel, seventh regulatory subunit. Through reconstitution of catalytically active human ISWI complexes, we demonstrate that the new interactions described here are stable and direct. Finally, we profile the nucleosome remodeling functions of the now expanded family of ISWI chromatin remodelers. By revealing the combinatorial nature of ISWI complexes, we provide a basis for better understanding ISWI function in normal settings and disease.
© 2017 Genentech, Inc.

Entities:  

Keywords:  zzm321990ACFzzm321990; zzm321990BAZzzm321990; zzm321990SMARCAzzm321990; ISWI ATPase; chromatin remodelers

Mesh:

Substances:

Year:  2017        PMID: 28801535      PMCID: PMC5623870          DOI: 10.15252/embr.201744011

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  77 in total

1.  NoRC-dependent nucleosome positioning silences rRNA genes.

Authors:  Junwei Li; Gernot Längst; Ingrid Grummt
Journal:  EMBO J       Date:  2006-11-30       Impact factor: 11.598

2.  New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning.

Authors:  P T Lowary; J Widom
Journal:  J Mol Biol       Date:  1998-02-13       Impact factor: 5.469

3.  A comprehensive transcriptional portrait of human cancer cell lines.

Authors:  Christiaan Klijn; Steffen Durinck; Eric W Stawiski; Peter M Haverty; Zhaoshi Jiang; Hanbin Liu; Jeremiah Degenhardt; Oleg Mayba; Florian Gnad; Jinfeng Liu; Gregoire Pau; Jens Reeder; Yi Cao; Kiran Mukhyala; Suresh K Selvaraj; Mamie Yu; Gregory J Zynda; Matthew J Brauer; Thomas D Wu; Robert C Gentleman; Gerard Manning; Robert L Yauch; Richard Bourgon; David Stokoe; Zora Modrusan; Richard M Neve; Frederic J de Sauvage; Jeffrey Settleman; Somasekar Seshagiri; Zemin Zhang
Journal:  Nat Biotechnol       Date:  2014-12-08       Impact factor: 54.908

4.  ATP-dependent histone octamer sliding mediated by the chromatin remodeling complex NURF.

Authors:  A Hamiche; R Sandaltzopoulos; D A Gdula; C Wu
Journal:  Cell       Date:  1999-06-25       Impact factor: 41.582

5.  ATM-dependent chromatin remodeler Rsf-1 facilitates DNA damage checkpoints and homologous recombination repair.

Authors:  Sunwoo Min; Sujin Jo; Ho-Soo Lee; Sunyoung Chae; Jong-Soo Lee; Jae-Hoon Ji; Hyeseong Cho
Journal:  Cell Cycle       Date:  2013-12-18       Impact factor: 4.534

6.  Three-dimensional structure of human chromatin accessibility complex hCHRAC by electron microscopy.

Authors:  Minghui Hu; Yian-Biao Zhang; Luping Qian; Raymond P Briñas; Larisa Kuznetsova; James F Hainfeld
Journal:  J Struct Biol       Date:  2008-09-10       Impact factor: 2.867

7.  Isolation of human NURF: a regulator of Engrailed gene expression.

Authors:  Orr Barak; Maribeth A Lazzaro; William S Lane; David W Speicher; David J Picketts; Ramin Shiekhattar
Journal:  EMBO J       Date:  2003-11-17       Impact factor: 11.598

8.  Poly(ADP-ribosyl)ation links the chromatin remodeler SMARCA5/SNF2H to RNF168-dependent DNA damage signaling.

Authors:  Godelieve Smeenk; Wouter W Wiegant; Jurgen A Marteijn; Martijn S Luijsterburg; Nicholas Sroczynski; Thomas Costelloe; Ron J Romeijn; Albert Pastink; Niels Mailand; Wim Vermeulen; Haico van Attikum
Journal:  J Cell Sci       Date:  2012-12-21       Impact factor: 5.285

9.  NuMA promotes homologous recombination repair by regulating the accumulation of the ISWI ATPase SNF2h at DNA breaks.

Authors:  Pierre-Alexandre Vidi; Jing Liu; Daniela Salles; Swaathi Jayaraman; George Dorfman; Matthew Gray; Patricia Abad; Prabhas V Moghe; Joseph M Irudayaraj; Lisa Wiesmüller; Sophie A Lelièvre
Journal:  Nucleic Acids Res       Date:  2014-04-20       Impact factor: 16.971

10.  The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes.

Authors:  Lisa R Racki; Janet G Yang; Nariman Naber; Peretz D Partensky; Ashley Acevedo; Thomas J Purcell; Roger Cooke; Yifan Cheng; Geeta J Narlikar
Journal:  Nature       Date:  2009-12-24       Impact factor: 49.962

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  27 in total

1.  Expansion of the ISWI chromatin remodeler family with new active complexes.

Authors:  Mariano Oppikofer; Tianyi Bai; Yutian Gan; Benjamin Haley; Peter Liu; Wendy Sandoval; Claudio Ciferri; Andrea G Cochran
Journal:  EMBO Rep       Date:  2017-08-11       Impact factor: 8.807

2.  Chromatin remodeling: a complex affair.

Authors:  Nathan Gioacchini; Craig L Peterson
Journal:  EMBO Rep       Date:  2017-08-23       Impact factor: 8.807

3.  The nucleosomal acidic patch relieves auto-inhibition by the ISWI remodeler SNF2h.

Authors:  Nathan Gamarra; Stephanie L Johnson; Michael J Trnka; Alma L Burlingame; Geeta J Narlikar
Journal:  Elife       Date:  2018-04-17       Impact factor: 8.140

4.  The Master Regulator Protein BAZ2B Can Reprogram Human Hematopoietic Lineage-Committed Progenitors into a Multipotent State.

Authors:  Karthik Arumugam; William Shin; Valentina Schiavone; Lukas Vlahos; Xiaochuan Tu; Davide Carnevali; Jordan Kesner; Evan O Paull; Neus Romo; Prem Subramaniam; Jeremy Worley; Xiangtian Tan; Andrea Califano; Maria Pia Cosma
Journal:  Cell Rep       Date:  2020-12-08       Impact factor: 9.423

5.  GSK2801, a BAZ2/BRD9 Bromodomain Inhibitor, Synergizes with BET Inhibitors to Induce Apoptosis in Triple-Negative Breast Cancer.

Authors:  Samantha M Bevill; Jose F Olivares-Quintero; Noah Sciaky; Brian T Golitz; Darshan Singh; Adriana S Beltran; Naim U Rashid; Timothy J Stuhlmiller; Andrew Hale; Nathaniel J Moorman; Charlene M Santos; Steven P Angus; Jon S Zawistowski; Gary L Johnson
Journal:  Mol Cancer Res       Date:  2019-04-18       Impact factor: 5.852

6.  HELLS and CDCA7 comprise a bipartite nucleosome remodeling complex defective in ICF syndrome.

Authors:  Christopher Jenness; Simona Giunta; Manuel M Müller; Hiroshi Kimura; Tom W Muir; Hironori Funabiki
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-16       Impact factor: 11.205

7.  Pathogenic variants in SMARCA5, a chromatin remodeler, cause a range of syndromic neurodevelopmental features.

Authors:  Dong Li; Qin Wang; Naihua N Gong; Alina Kurolap; Hagit Baris Feldman; Nikolas Boy; Melanie Brugger; Katheryn Grand; Kirsty McWalter; Maria J Guillen Sacoto; Emma Wakeling; Jane Hurst; Michael E March; Elizabeth J Bhoj; Małgorzata J M Nowaczyk; Claudia Gonzaga-Jauregui; Mariam Mathew; Ashita Dava-Wala; Amy Siemon; Dennis Bartholomew; Yue Huang; Hane Lee; Julian A Martinez-Agosto; Eva M C Schwaibold; Theresa Brunet; Daniela Choukair; Lynn S Pais; Susan M White; John Christodoulou; Dana Brown; Kristin Lindstrom; Theresa Grebe; Dov Tiosano; Matthew S Kayser; Tiong Yang Tan; Matthew A Deardorff; Yuanquan Song; Hakon Hakonarson
Journal:  Sci Adv       Date:  2021-05-12       Impact factor: 14.136

Review 8.  Peculiarities of Plasmodium falciparum Gene Regulation and Chromatin Structure.

Authors:  Maria Theresia Watzlowik; Sujaan Das; Markus Meissner; Gernot Längst
Journal:  Int J Mol Sci       Date:  2021-05-13       Impact factor: 5.923

Review 9.  Sophisticated Conversations between Chromatin and Chromatin Remodelers, and Dissonances in Cancer.

Authors:  Cedric R Clapier
Journal:  Int J Mol Sci       Date:  2021-05-25       Impact factor: 5.923

10.  Impaired SNF2L Chromatin Remodeling Prolongs Accessibility at Promoters Enriched for Fos/Jun Binding Sites and Delays Granule Neuron Differentiation.

Authors:  Laura R Goodwin; Gerardo Zapata; Sara Timpano; Jacob Marenger; David J Picketts
Journal:  Front Mol Neurosci       Date:  2021-07-06       Impact factor: 5.639

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