| Literature DB >> 28793673 |
Feng Wang1, Shawkat Islam2, Vladislav Vasilyev3.
Abstract
Two very different quantum mechanically based energy decomposition analyses (EDA) schemes are employed to study the dominant energy differences between the eclipsed and staggered ferrocene conformers. One is the extended transition state (ETS) based on the Amsterdam Density Functional (ADF) package and the other is natural EDA (NEDA) based in the General Atomic and Molecular Electronic Structure System (GAMESS) package. It reveals that in addition to the model (theory and basis set), the fragmentation channels more significantly affect the interaction energy terms (ΔE) between the conformers. It is discovered that such an interaction energy can be absorbed into the pre-partitioned fragment channels so that to affect the interaction energies in a particular conformer of Fc. To avoid this, the present study employs a complete fragment channel-the fragments of ferrocene are individual neutral atoms. It therefore discovers that the major difference between the ferrocene conformers is due to the quantum mechanical Pauli repulsive energy and orbital attractive energy, leading to the eclipsed ferrocene the energy preferred structure. The NEDA scheme further indicates that the sum of attractive (negative) polarization (POL) and charge transfer (CL) energies prefers the eclipsed ferrocene. The repulsive (positive) deformation (DEF) energy, which is dominated by the cyclopentadienyle (Cp) rings, prefers the staggered ferrocene. Again, the cancellation results in a small energy residue in favour of the eclipsed ferrocene, in agreement with the ETS scheme. Further Natural Bond Orbital (NBO) analysis indicates that all NBO energies, total Lewis (no Fe) and lone pair (LP) deletion all prefer the eclipsed Fc conformer. The most significant energy preferring the eclipsed ferrocene without cancellation is the interactions between the donor lone pairs (LP) of the Fe atom and the acceptor antibond (BD*) NBOs of all C-C and C-H bonds in the ligand, LP(Fe)-BD*(C-C & C-H), which strongly stabilizes the eclipsed (D5h) conformation by -457.6 kcal·mol-1.Entities:
Keywords: eclipsed and staggered conformers; energy decomposition analysis; ferrocene; intramolecular interaction; natural bond orbital scheme; quantum mechanical models
Year: 2015 PMID: 28793673 PMCID: PMC5458881 DOI: 10.3390/ma8115419
Source DB: PubMed Journal: Materials (Basel) ISSN: 1996-1944 Impact factor: 3.623
Summary of previous EDA studies for ferrocene conformers in the literature (kcal·mol−1) *.
| Frag Channel | M + 2Cp | M2+ + 2Cp− | M2+ + 2Cp− | M2+ + 2Cp− | M2+ + 2Cp− | M2+ + 2Cp− | M2+ + Cp22− | M2+ + Cp22− | MCp+ + Cp− |
|---|---|---|---|---|---|---|---|---|---|
| Model Basis Set | BP86 TZP [ | BP86 TZP [ | BP86 TZP [ | BP86 TZ2P [ | B_PW91 TZ2P a [ | OPBE TZP [ | PW91 TZ2P [ | PW91 TZ2P [ | BP86 TZP [ |
| Conformer | D5d | D5d | D5d | D5d | D5h | D5h | D5h | D5d | D5d |
| Δ | 409.6 | 279.9 | 272.2 | 282.0 | – | 345.7 | 399.23 | 398.85 | 172.4 |
| Δ | −307.5 | −599.9 | −598.0 | −600.5 | – | −619.1 | −229.05 | −229.36 | −238.5 |
| Δ | −376.3 | −573.9 | −567.5 | −577.6 | – | −634.5 | −626.35 | −624.17 | −171.5 |
| Δ | −274.2 | −893.9 | −893.3 | −896.0 | −919 | −907.9 | −456.17 | −454.68 | −237.6 |
* Based on the ADF computational chemistry package; a A modified Slater type TZ2P basis set (see [39]).
Comparison of energy terms for the eclipsed (D5h) and staggered (D5d) ferrocene using the DFT based BP86 model and HF model with different basic sets (kcal·mol−1) 1,2.
| Energy Frag 1,2 | BP86/TZP | BP86/TZ2P | BP86/TZ2P+ | ||||||
|---|---|---|---|---|---|---|---|---|---|
| D5h | D5d | ΔΔ | D5h | D5d | ΔΔ | D5h | D5d | ΔΔ | |
| Δ | −2794.94 | −2789.68 | −5.26 | −2794.94 | −2789.68 | −5.26 | −2793.10 | −2787.85 | −5.25 |
| Δ | 12,679.83 | 12,666.40 | 13.43 | 12,679.83 | 12,666.40 | 13.43 | 12,675.76 | 12,662.35 | 13.41 |
| Δ | −12,942.17 | −12,933.04 | −9.13 | −12,954.25 | −12,945.16 | −9.09 | −12,952.85 | −12,943.81 | −9.04 |
| Δ | −3057.29 | −3056.32 | −0.97 | −3069.36 | −3068.45 | −0.91 | −3070.20 | −3069.31 | −0.89 |
| Δ | 9884.88 | 9876.71 | 8.17 | 9884.89 | 9876.71 | 8.18 | 9882.66 | 9874.50 | 8.16 |
| Δ | −3332.24 | −3325.18 | −7.06 | −229.05 | −229.36 | 0.31 | |||
| Δ | 14,486.28 | 14,470.29 | 15.99 | −399.23 | −398.85 | −0.38 | |||
| Δ | −16,465.98 | −16,457.79 | −8.19 | −626.35 | −624.17 | −2.18 | |||
| Δ | −5311.94 | −5312.68 | 0.74 | −456.17 | −454.68 | −1.49 | |||
| Δ | 11,154.04 | 11,145.11 | 8.93 | −628.28 | −628.21 | −0.07 | |||
1 The fragment scheme is Fe(C5H5)2 → Fe ((3d)6, singlet) + 10 C ((2p)2, singlet) + 10 H ((1s)1, doublet); 2 Based on the B3LYP/m6-31G(d) optimised geometry [2]; 3 ΔΔE = ΔE(D5h) − ΔE(D5d); 4 In the HF/TZ2P EDA calculations, the QZ4P fit was applied [40]; 5 The fragmentation scheme is Fe(C5H5)2 → M2+ + Cp22− [38].
Comparison of energy terms for the eclipsed (D5h) and staggered (D5d) ferrocene using different level of theory with the TZ2P+ basic set (kcal·mol−1) 1,2.
| Δ | −2793.10 | −2787.85 | −5.25 | −2793.10 | −2787.85 | −5.25 |
| Δ | −49,351.36 | −49,365.98 | 14.62 | −54,025.19 | −54,039.14 | 13.95 |
| Δ | −16,840.51 | −16,832.75 | −7.76 | −14,568.75 | −14,560.82 | −7.93 |
| Δ | −68,984.98 | −68,986.58 | 1.60 | −71,387.05 | −71,387.81 | 0.76 |
| Δ | −52,144.47 | −52,153.83 | 9.36 | −56,818.3 | −56,826.99 | 8.69 |
| Δ | −2793.10 | −2787.85 | −5.25 | −2793.10 | −2787.85 | −5.25 |
| Δ | 222.39 | 208.73 | 13.66 | 12,675.76 | 12,662.35 | 13.41 |
| Δ | −13,630.90 | −13,622.42 | −8.48 | −12,952.85 | −12,943.81 | −9.04 |
| Δ | −16,201.62 | −16,201.53 | −0.09 | −3070.20 | −3069.31 | −0.89 |
| Δ | −2570.72 | −2579.12 | 8.40 | 9882.66 | 9874.50 | 8.16 |
1 The fragment scheme is Fe(C5H5)2 → Fe ((3d)6, singlet) + 10 C ((2p)2, singlet) + 10 H ((1s)1, doublet); 2 based on the B3LYP/m6-31G(d) optimised geometry [2]; 3 ΔΔEi = ΔEi(D5h) − ΔEi(D5d).
Energy decomposition of ferrocene conformational differences using NEDA scheme (kcal·mol−1) a,b.
| Energy Component c | D5h | D5d | ΔE d |
|---|---|---|---|
| EL (ES + POL + SE) | −1011.05 | −1006.23 | −4.82 |
| ES | −676.89 | −675.31 | −1.58 |
| POL | −671.73 | −665.46 | −6.27 |
| SE (Fe) | 35.89 | 35.84 | 0.05 |
| SE (Cp) | 150.84 | 149.35 | 1.49 |
| SE (Cp) | 150.84 | 149.35 | 1.49 |
| Tot SE | 337.57 | 334.54 | 3.03 |
| Charge Transfer (CT) | −634.02 | −628.67 | −5.35 |
| Core (XC + DEF − SE) | 880.64 | 870.91 | 9.73 |
| XC | −200.44 | −198.58 | −1.86 |
| DEF (Fe) | 395.28 | 392.47 | 2.81 |
| DEF (Cp) | 511.69 | 505.78 | 5.91 |
| DEF (Cp) | 511.68 | 505.78 | 5.90 |
| Tot DEF | 1418.65 | 1404.03 | 14.62 |
| Etot (EL + CT + Core) | −764.43 | −763.99 | −0.44 |
a using B3LYP/m6-31G(d) model; b The fragment scheme is FeCp2 → Fe + 2Cp; c ES: electrostatic; POL: polarization; SE: self-energy correction (“polarization penalty”) for each centre; XC: exchange; DEF: “deformation” energy; d ΔE = E(D5h) − E(D5d);
NBO Analysis of ferrocene conformational differences *.
| Energy Decomposition | Δ | ||
|---|---|---|---|
| Lewis Contribution (Fc) | |||
| Total | −1650.66185 | −1650.661026 | −0.52 |
| Total Lewis ( | −1648.30198 | −1647.402542 | −564.41 |
| Total Non-Lewis ( | −2.35987395 | −3.25848317 | 563.89 |
| Lewis Contribution (No Fe) | |||
| Total | −386.897706 | −386.8974192 | −0.18 |
| Total Lewis ( | −385.653328 | −385.6162447 | −23.27 |
| Total Non-Lewis ( | 1.244378 | 1.281174 | 23.09 |
| LP(Fe) – BD *(C-C & C-H) | |||
| Energy of Deletion ( | −1650.02738 | −1649.298117 | −457.62 |
| LP(Fe) – RY *(C & H) | |||
| Energy of Deletion ( | −1650. 02384 | −1650.013585 | −6.43 |
* Based on B3LYP/m6-31G(d) optimized geometries [3]; a ΔE = E(Eclipsed) − E (Staggered).