Literature DB >> 16366646

Natural energy decomposition analysis: extension to density functional methods and analysis of cooperative effects in water clusters.

Eric D Glendening1.   

Abstract

Natural energy decomposition analysis (NEDA) is a method for partitioning molecular interaction energies into physically meaningful components, including electrical interaction, charge transfer, and core repulsions. The method is a numerically stable procedure that was originally developed for analyzing Hartree-Fock (HF) wave functions based on the localized orbital description of natural bond orbital analysis. In this work, we extend NEDA to treat charge densities from density functional theory (DFT) calculations, replacing the intermolecular exchange (EX) component of the HF analysis with an exchange-correlation (XC) component. DFT/NEDA is applied to hydrogen bonding interactions and cooperative effects in water clusters. Electrical interactions and charge transfer contribute importantly to hydrogen bonding. Comparison of HF and DFT results reveals that the exchange and correlation effects of DFT slightly enhance the extent of charge transfer and core repulsions in the water clusters. Cooperative stabilization of the cyclic water trimer and tetramer is considered by performing a many-body expansion of the interaction energy. Natural energy decomposition analysis of this expansion suggests that charge transfer is the leading source of cooperative stabilization. Polarization effects have only marginal influence on cooperativity.

Entities:  

Year:  2005        PMID: 16366646     DOI: 10.1021/jp058209s

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  18 in total

1.  Theoretical description of hydrogen bonding in oxalic acid dimer and trimer based on the combined extended-transition-state energy decomposition analysis and natural orbitals for chemical valence (ETS-NOCV).

Authors:  Mariusz P Mitoraj; Rafał Kurczab; Marek Boczar; Artur Michalak
Journal:  J Mol Model       Date:  2010-05-28       Impact factor: 1.810

2.  Theoretical insight into the solvent effect of H2O and formamide on the cooperativity effect in HMX complex.

Authors:  Rui-Hong Meng; Xiong Cao; Shuang-Qi Hu; Li-Shuang Hu
Journal:  J Mol Model       Date:  2017-07-22       Impact factor: 1.810

Review 3.  Lone pair-π interactions in biological systems: occurrence, function, and physical origin.

Authors:  Jiří Kozelka
Journal:  Eur Biophys J       Date:  2017-05-02       Impact factor: 1.733

4.  Electronic signature of the instantaneous asymmetry in the first coordination shell of liquid water.

Authors:  Thomas D Kühne; Rustam Z Khaliullin
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

Review 5.  Energy decomposition analysis based on a block-localized wavefunction and multistate density functional theory.

Authors:  Yirong Mo; Peng Bao; Jiali Gao
Journal:  Phys Chem Chem Phys       Date:  2011-03-02       Impact factor: 3.676

6.  Theoretical investigation on the water-assisted excited-state proton transfer of 7-azaindole derivatives: substituent effect.

Authors:  Jiacheng Yi; Hua Fang
Journal:  J Mol Model       Date:  2017-10-14       Impact factor: 1.810

7.  A B3LYP and MP2(full) theoretical investigation into the cooperativity effect between dihydrogen-bonding and H-M∙∙∙π (M = Li, Na, K) interactions among HF, MH with the π-electron donor C2H2, C2H4 or C6H6.

Authors:  Jian-feng Guo; Wen-jing Shi; Fu-de Ren; Duan-lin Cao; Yuan-sheng Zhang
Journal:  J Mol Model       Date:  2013-04-26       Impact factor: 1.810

8.  Nature of halogen bonding. A study based on the topological analysis of the Laplacian of the electron charge density and an energy decomposition analysis.

Authors:  Darío J R Duarte; Gladis L Sosa; Nélida M Peruchena
Journal:  J Mol Model       Date:  2012-10-18       Impact factor: 1.810

9.  A B3LYP and MP2(full) theoretical investigation into cooperativity effects, aromaticity and thermodynamic properties in the Na(+)⋯benzonitrile⋯H2O ternary complex.

Authors:  Guang-ming Zhao; Yu-cun Liu; Wen-jing Shi; Tao Chai; Fu-de Ren
Journal:  J Mol Model       Date:  2014-07-09       Impact factor: 1.810

10.  Energy decomposition analysis of single bonds within Kohn-Sham density functional theory.

Authors:  Daniel S Levine; Martin Head-Gordon
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-20       Impact factor: 11.205

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