Literature DB >> 28759256

Rethinking m6A Readers, Writers, and Erasers.

Kate D Meyer1, Samie R Jaffrey2.   

Abstract

In recent years, m6A has emerged as an abundant and dynamically regulated modification throughout the transcriptome. Recent technological advances have enabled the transcriptome-wide identification of m6A residues, which in turn has provided important insights into the biology and regulation of this pervasive regulatory mark. Also central to our current understanding of m6A are the discovery and characterization of m6A readers, writers, and erasers. Over the last few years, studies into the function of these proteins have led to important discoveries about the regulation and function of m6A. However, during this time our understanding of these proteins has also evolved considerably, sometimes leading to the reversal of early concepts regarding the reading, writing and erasing of m6A. In this review, we summarize recent advances in m6A research, and we highlight how these new findings have reshaped our understanding of how m6A is regulated in the transcriptome.

Entities:  

Keywords:  RNA modifications; epitranscriptome; m6A; posttranscriptional control

Mesh:

Substances:

Year:  2017        PMID: 28759256      PMCID: PMC5963928          DOI: 10.1146/annurev-cellbio-100616-060758

Source DB:  PubMed          Journal:  Annu Rev Cell Dev Biol        ISSN: 1081-0706            Impact factor:   13.827


  98 in total

1.  N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency.

Authors:  Xiao Wang; Boxuan Simen Zhao; Ian A Roundtree; Zhike Lu; Dali Han; Honghui Ma; Xiaocheng Weng; Kai Chen; Hailing Shi; Chuan He
Journal:  Cell       Date:  2015-06-04       Impact factor: 41.582

2.  m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells.

Authors:  Pedro J Batista; Benoit Molinie; Jinkai Wang; Kun Qu; Jiajing Zhang; Lingjie Li; Donna M Bouley; Ernesto Lujan; Bahareh Haddad; Kaveh Daneshvar; Ava C Carter; Ryan A Flynn; Chan Zhou; Kok-Seong Lim; Peter Dedon; Marius Wernig; Alan C Mullen; Yi Xing; Cosmas C Giallourakis; Howard Y Chang
Journal:  Cell Stem Cell       Date:  2014-10-16       Impact factor: 24.633

3.  Molecular basis for the recognition of methylated adenines in RNA by the eukaryotic YTH domain.

Authors:  Shukun Luo; Liang Tong
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-08       Impact factor: 11.205

4.  FTO Obesity Variant Circuitry and Adipocyte Browning in Humans.

Authors:  Melina Claussnitzer; Simon N Dankel; Kyoung-Han Kim; Gerald Quon; Wouter Meuleman; Christine Haugen; Viktoria Glunk; Isabel S Sousa; Jacqueline L Beaudry; Vijitha Puviindran; Nezar A Abdennur; Jannel Liu; Per-Arne Svensson; Yi-Hsiang Hsu; Daniel J Drucker; Gunnar Mellgren; Chi-Chung Hui; Hans Hauner; Manolis Kellis
Journal:  N Engl J Med       Date:  2015-08-19       Impact factor: 91.245

5.  Hypomorphism of Fto and Rpgrip1l causes obesity in mice.

Authors:  George Stratigopoulos; Lisa Cole Burnett; Richard Rausch; Richard Gill; David Barth Penn; Alicja A Skowronski; Charles A LeDuc; Anthony J Lanzano; Pumin Zhang; Daniel R Storm; Dieter Egli; Rudolph L Leibel
Journal:  J Clin Invest       Date:  2016-04-11       Impact factor: 14.808

6.  Regulation of eukaryotic initiation factor 4E by converging signaling pathways during metabotropic glutamate receptor-dependent long-term depression.

Authors:  Jessica L Banko; Lingfei Hou; Francis Poulin; Nahum Sonenberg; Eric Klann
Journal:  J Neurosci       Date:  2006-02-22       Impact factor: 6.167

7.  The fat mass and obesity associated gene (Fto) regulates activity of the dopaminergic midbrain circuitry.

Authors:  Martin E Hess; Simon Hess; Kate D Meyer; Linda A W Verhagen; Linda Koch; Hella S Brönneke; Marcelo O Dietrich; Sabine D Jordan; Yogesh Saletore; Olivier Elemento; Bengt F Belgardt; Thomas Franz; Tamas L Horvath; Ulrich Rüther; Samie R Jaffrey; Peter Kloppenburg; Jens C Brüning
Journal:  Nat Neurosci       Date:  2013-06-30       Impact factor: 24.884

8.  RNA biochemistry. Transcriptome-wide distribution and function of RNA hydroxymethylcytosine.

Authors:  Benjamin Delatte; Fei Wang; Long Vo Ngoc; Evelyne Collignon; Elise Bonvin; Rachel Deplus; Emilie Calonne; Bouchra Hassabi; Pascale Putmans; Stephan Awe; Collin Wetzel; Judith Kreher; Romuald Soin; Catherine Creppe; Patrick A Limbach; Cyril Gueydan; Véronique Kruys; Alexander Brehm; Svetlana Minakhina; Matthieu Defrance; Ruth Steward; François Fuks
Journal:  Science       Date:  2016-01-15       Impact factor: 47.728

9.  Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome.

Authors:  Bastian Linder; Anya V Grozhik; Anthony O Olarerin-George; Cem Meydan; Christopher E Mason; Samie R Jaffrey
Journal:  Nat Methods       Date:  2015-06-29       Impact factor: 28.547

10.  Transcription Impacts the Efficiency of mRNA Translation via Co-transcriptional N6-adenosine Methylation.

Authors:  Boris Slobodin; Ruiqi Han; Vittorio Calderone; Joachim A F Oude Vrielink; Fabricio Loayza-Puch; Ran Elkon; Reuven Agami
Journal:  Cell       Date:  2017-04-06       Impact factor: 41.582

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  348 in total

1.  m6A RNA Degradation Products Are Catabolized by an Evolutionarily Conserved N6-Methyl-AMP Deaminase in Plant and Mammalian Cells.

Authors:  Mingjia Chen; Mounashree J Urs; Ismael Sánchez-González; Monilola A Olayioye; Marco Herde; Claus-Peter Witte
Journal:  Plant Cell       Date:  2018-06-08       Impact factor: 11.277

2.  m6A mRNA methylation regulates testosterone synthesis through modulating autophagy in Leydig cells.

Authors:  Yabing Chen; Jing Wang; Dihui Xu; Zou Xiang; Jie Ding; Xiaoyu Yang; Dongmei Li; Xiaodong Han
Journal:  Autophagy       Date:  2020-01-31       Impact factor: 16.016

Review 3.  Biochemistry and Molecular Biology of Flaviviruses.

Authors:  Nicholas J Barrows; Rafael K Campos; Kuo-Chieh Liao; K Reddisiva Prasanth; Ruben Soto-Acosta; Shih-Chia Yeh; Geraldine Schott-Lerner; Julien Pompon; October M Sessions; Shelton S Bradrick; Mariano A Garcia-Blanco
Journal:  Chem Rev       Date:  2018-04-13       Impact factor: 60.622

Review 4.  Where, When, and How: Context-Dependent Functions of RNA Methylation Writers, Readers, and Erasers.

Authors:  Hailing Shi; Jiangbo Wei; Chuan He
Journal:  Mol Cell       Date:  2019-05-16       Impact factor: 17.970

Review 5.  Beyond DNA and RNA: The Expanding Toolbox of Synthetic Genetics.

Authors:  Alexander I Taylor; Gillian Houlihan; Philipp Holliger
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-06-03       Impact factor: 10.005

6.  RBM15 Modulates the Function of Chromatin Remodeling Factor BAF155 Through RNA Methylation in Developing Cortex.

Authors:  Yuanbin Xie; Ricardo Castro-Hernández; Godwin Sokpor; Linh Pham; Ramanathan Narayanan; Joachim Rosenbusch; Jochen F Staiger; Tran Tuoc
Journal:  Mol Neurobiol       Date:  2019-04-24       Impact factor: 5.590

Review 7.  Translational Control under Stress: Reshaping the Translatome.

Authors:  Vivek M Advani; Pavel Ivanov
Journal:  Bioessays       Date:  2019-05       Impact factor: 4.345

8.  m6A RNA methylation regulators contribute to malignant development and have a clinical prognostic effect on cervical cancer.

Authors:  Xiaoqing Ma; Yan Li; Ji Wen; Yu Zhao
Journal:  Am J Transl Res       Date:  2020-12-15       Impact factor: 4.060

9.  Identification of genetic variants in m6A modification genes associated with pancreatic cancer risk in the Chinese population.

Authors:  Pingting Ying; Yao Li; Nan Yang; Xiaoyang Wang; Haoxue Wang; Heng He; Bin Li; Xiating Peng; Danyi Zou; Ying Zhu; Rong Zhong; Xiaoping Miao; Jianbo Tian; Jiang Chang
Journal:  Arch Toxicol       Date:  2021-01-21       Impact factor: 5.153

10.  Xio is a component of the Drosophila sex determination pathway and RNA N6-methyladenosine methyltransferase complex.

Authors:  Jian Guo; Hong-Wen Tang; Jing Li; Norbert Perrimon; Dong Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-19       Impact factor: 11.205

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