Literature DB >> 28749073

Arranging eukaryotic nuclear DNA polymerases for replication: Specific interactions with accessory proteins arrange Pols α, δ, and ϵ in the replisome for leading-strand and lagging-strand DNA replication.

Thomas A Kunkel1, Peter M J Burgers2.   

Abstract

Biochemical and cryo-electron microscopy studies have just been published revealing interactions among proteins of the yeast replisome that are important for highly coordinated synthesis of the two DNA strands of the nuclear genome. These studies reveal key interactions important for arranging DNA polymerases α, δ, and ϵ for leading and lagging strand replication. The CMG (Mcm2-7, Cdc45, GINS) helicase is central to this interaction network. These are but the latest examples of elegant studies performed in the recent past that lead to a much better understanding of how the eukaryotic replication fork achieves efficient DNA replication that is accurate enough to prevent diseases yet allows evolution. This article has been contributed to by US Government employees and their work is in the public domain in the USA.

Entities:  

Keywords:  DNA polymerases; DNA replication; cryo-electron microscopy; initiation of replication; replisome

Mesh:

Substances:

Year:  2017        PMID: 28749073      PMCID: PMC5579836          DOI: 10.1002/bies.201700070

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  44 in total

Review 1.  The MCM Helicase Motor of the Eukaryotic Replisome.

Authors:  Ferdos Abid Ali; Alessandro Costa
Journal:  J Mol Biol       Date:  2016-01-30       Impact factor: 5.469

2.  Division of labor at the eukaryotic replication fork.

Authors:  Stephanie A Nick McElhinny; Dmitry A Gordenin; Carrie M Stith; Peter M J Burgers; Thomas A Kunkel
Journal:  Mol Cell       Date:  2008-04-25       Impact factor: 17.970

3.  Chromatin Constrains the Initiation and Elongation of DNA Replication.

Authors:  Sujan Devbhandari; Jieqing Jiang; Charanya Kumar; Iestyn Whitehouse; Dirk Remus
Journal:  Mol Cell       Date:  2016-12-15       Impact factor: 17.970

4.  Intrinsic coupling of lagging-strand synthesis to chromatin assembly.

Authors:  Duncan J Smith; Iestyn Whitehouse
Journal:  Nature       Date:  2012-03-14       Impact factor: 49.962

5.  Mechanism of Concerted RNA-DNA Primer Synthesis by the Human Primosome.

Authors:  Andrey G Baranovskiy; Nigar D Babayeva; Yinbo Zhang; Jianyou Gu; Yoshiaki Suwa; Youri I Pavlov; Tahir H Tahirov
Journal:  J Biol Chem       Date:  2016-03-14       Impact factor: 5.157

Review 6.  Processing ribonucleotides incorporated during eukaryotic DNA replication.

Authors:  Jessica S Williams; Scott A Lujan; Thomas A Kunkel
Journal:  Nat Rev Mol Cell Biol       Date:  2016-04-20       Impact factor: 94.444

7.  The architecture of a eukaryotic replisome.

Authors:  Jingchuan Sun; Yi Shi; Roxana E Georgescu; Zuanning Yuan; Brian T Chait; Huilin Li; Michael E O'Donnell
Journal:  Nat Struct Mol Biol       Date:  2015-11-02       Impact factor: 15.369

8.  Ctf4 Is a Hub in the Eukaryotic Replisome that Links Multiple CIP-Box Proteins to the CMG Helicase.

Authors:  Fabrizio Villa; Aline C Simon; Maria Angeles Ortiz Bazan; Mairi L Kilkenny; David Wirthensohn; Mel Wightman; Dijana Matak-Vinkovíc; Luca Pellegrini; Karim Labib
Journal:  Mol Cell       Date:  2016-07-07       Impact factor: 17.970

9.  Chromatin Controls DNA Replication Origin Selection, Lagging-Strand Synthesis, and Replication Fork Rates.

Authors:  Christoph F Kurat; Joseph T P Yeeles; Harshil Patel; Anne Early; John F X Diffley
Journal:  Mol Cell       Date:  2016-12-15       Impact factor: 17.970

10.  Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition.

Authors:  Scott A Lujan; Anders R Clausen; Alan B Clark; Heather K MacAlpine; David M MacAlpine; Ewa P Malc; Piotr A Mieczkowski; Adam B Burkholder; David C Fargo; Dmitry A Gordenin; Thomas A Kunkel
Journal:  Genome Res       Date:  2014-09-12       Impact factor: 9.043

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  15 in total

Review 1.  The Eukaryotic CMG Helicase at the Replication Fork: Emerging Architecture Reveals an Unexpected Mechanism.

Authors:  Huilin Li; Michael E O'Donnell
Journal:  Bioessays       Date:  2018-02-06       Impact factor: 4.345

2.  Replication fork convergence at termination: A multistep process.

Authors:  Nina Y Yao; Mike E O'Donnell
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-19       Impact factor: 11.205

3.  The absence of the catalytic domains of Saccharomyces cerevisiae DNA polymerase ϵ strongly reduces DNA replication fidelity.

Authors:  Marta A Garbacz; Phillip B Cox; Sushma Sharma; Scott A Lujan; Andrei Chabes; Thomas A Kunkel
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

4.  Probing the mechanisms of two exonuclease domain mutators of DNA polymerase ϵ.

Authors:  Joseph M Dahl; Natalie Thomas; Maxwell A Tracy; Brady L Hearn; Lalith Perera; Scott R Kennedy; Alan J Herr; Thomas A Kunkel
Journal:  Nucleic Acids Res       Date:  2022-01-25       Impact factor: 16.971

Review 5.  Post-Translational Modifications of PCNA: Guiding for the Best DNA Damage Tolerance Choice.

Authors:  Gemma Bellí; Neus Colomina; Laia Castells-Roca; Neus P Lorite
Journal:  J Fungi (Basel)       Date:  2022-06-10

6.  Molecular mechanisms of eukaryotic origin initiation, replication fork progression, and chromatin maintenance.

Authors:  Zuanning Yuan; Huilin Li
Journal:  Biochem J       Date:  2020-09-30       Impact factor: 3.857

Review 7.  DNA Replication Through Strand Displacement During Lagging Strand DNA Synthesis in Saccharomyces cerevisiae.

Authors:  Michele Giannattasio; Dana Branzei
Journal:  Genes (Basel)       Date:  2019-02-21       Impact factor: 4.096

8.  Cryo-EM structure of Mcm2-7 double hexamer on DNA suggests a lagging-strand DNA extrusion model.

Authors:  Yasunori Noguchi; Zuanning Yuan; Lin Bai; Sarah Schneider; Gongpu Zhao; Bruce Stillman; Christian Speck; Huilin Li
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-25       Impact factor: 11.205

9.  DNA replication protein Cdc45 directly interacts with PCNA via its PIP box in Leishmania donovani and the Cdc45 PIP box is essential for cell survival.

Authors:  Aarti Yadav; Varshni Sharma; Jyoti Pal; Pallavi Gulati; Manisha Goel; Udita Chandra; Neha Bansal; Swati Saha
Journal:  PLoS Pathog       Date:  2020-05-15       Impact factor: 6.823

10.  Histone H2A-H2B binding by Pol α in the eukaryotic replisome contributes to the maintenance of repressive chromatin.

Authors:  Cecile Evrin; Joseph D Maman; Aurora Diamante; Luca Pellegrini; Karim Labib
Journal:  EMBO J       Date:  2018-08-13       Impact factor: 11.598

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