Literature DB >> 25333139

SIMPLE is a good idea (and better with context learning).

Zhoubing Xu, Andrew J Asman, Peter L Shanahan, Richard G Abramson, Bennett A Landman.   

Abstract

Selective and iterative method for performance level estimation (SIMPLE) is a multi-atlas segmentation technique that integrates atlas selection and label fusion that has proven effective for radiotherapy planning. Herein, we revisit atlas selection and fusion techniques in the context of segmenting the spleen in metastatic liver cancer patients with possible splenomegaly using clinically acquired computed tomography (CT). We re-derive the SIMPLE algorithm in the context of the statistical literature, and show that the atlas selection criteria rest on newly presented principled likelihood models. We show that SIMPLE performance can be improved by accounting for exogenous information through Bayesian priors (so called context learning). These innovations are integrated with the joint label fusion approach to reduce the impact of correlated errors among selected atlases. In a study of 65 subjects, the spleen was segmented with median Dice similarity coefficient of 0.93 and a mean surface distance error of 2.2 mm.

Entities:  

Mesh:

Year:  2014        PMID: 25333139      PMCID: PMC5102148          DOI: 10.1007/978-3-319-10404-1_46

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  10 in total

1.  Automated model-based bias field correction of MR images of the brain.

Authors:  K Van Leemput; F Maes; D Vandermeulen; P Suetens
Journal:  IEEE Trans Med Imaging       Date:  1999-10       Impact factor: 10.048

2.  Nonrigid registration using free-form deformations: application to breast MR images.

Authors:  D Rueckert; L I Sonoda; C Hayes; D L Hill; M O Leach; D J Hawkes
Journal:  IEEE Trans Med Imaging       Date:  1999-08       Impact factor: 10.048

3.  Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation.

Authors:  Simon K Warfield; Kelly H Zou; William M Wells
Journal:  IEEE Trans Med Imaging       Date:  2004-07       Impact factor: 10.048

4.  Evaluation of atlas selection strategies for atlas-based image segmentation with application to confocal microscopy images of bee brains.

Authors:  Torsten Rohlfing; Robert Brandt; Randolf Menzel; Calvin R Maurer
Journal:  Neuroimage       Date:  2004-04       Impact factor: 6.556

5.  Label fusion in atlas-based segmentation using a selective and iterative method for performance level estimation (SIMPLE).

Authors:  Thomas Robin Langerak; Uulke A van der Heide; Alexis N T J Kotte; Max A Viergever; Marco van Vulpen; Josien P W Pluim
Journal:  IEEE Trans Med Imaging       Date:  2010-07-26       Impact factor: 10.048

6.  Automated abdominal multi-organ segmentation with subject-specific atlas generation.

Authors:  Robin Wolz; Chengwen Chu; Kazunari Misawa; Michitaka Fujiwara; Kensaku Mori; Daniel Rueckert
Journal:  IEEE Trans Med Imaging       Date:  2013-06-03       Impact factor: 10.048

7.  A generative model for image segmentation based on label fusion.

Authors:  Mert R Sabuncu; B T Thomas Yeo; Koen Van Leemput; Bruce Fischl; Polina Golland
Journal:  IEEE Trans Med Imaging       Date:  2010-06-17       Impact factor: 10.048

8.  Robust statistical label fusion through COnsensus Level, Labeler Accuracy, and Truth Estimation (COLLATE).

Authors:  Andrew J Asman; Bennett A Landman
Journal:  IEEE Trans Med Imaging       Date:  2011-04-29       Impact factor: 10.048

9.  Multi-Atlas Segmentation with Joint Label Fusion.

Authors:  Hongzhi Wang; Jung W Suh; Sandhitsu R Das; John B Pluta; Caryne Craige; Paul A Yushkevich
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2012-06-26       Impact factor: 6.226

10.  STEPS: Similarity and Truth Estimation for Propagated Segmentations and its application to hippocampal segmentation and brain parcelation.

Authors:  M Jorge Cardoso; Kelvin Leung; Marc Modat; Shiva Keihaninejad; David Cash; Josephine Barnes; Nick C Fox; Sebastien Ourselin
Journal:  Med Image Anal       Date:  2013-03-01       Impact factor: 8.545

  10 in total
  9 in total

1.  Efficient multi-atlas abdominal segmentation on clinically acquired CT with SIMPLE context learning.

Authors:  Zhoubing Xu; Ryan P Burke; Christopher P Lee; Rebeccah B Baucom; Benjamin K Poulose; Richard G Abramson; Bennett A Landman
Journal:  Med Image Anal       Date:  2015-05-21       Impact factor: 8.545

2.  Multi-Atlas Spleen Segmentation on CT Using Adaptive Context Learning.

Authors:  Jiaqi Liu; Yuankai Huo; Zhoubing Xu; Albert Assad; Richard G Abramson; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2017-02-24

3.  Automated Segmentation of Tissues Using CT and MRI: A Systematic Review.

Authors:  Leon Lenchik; Laura Heacock; Ashley A Weaver; Robert D Boutin; Tessa S Cook; Jason Itri; Christopher G Filippi; Rao P Gullapalli; James Lee; Marianna Zagurovskaya; Tara Retson; Kendra Godwin; Joey Nicholson; Ponnada A Narayana
Journal:  Acad Radiol       Date:  2019-08-10       Impact factor: 3.173

Review 4.  Multi-atlas segmentation of biomedical images: A survey.

Authors:  Juan Eugenio Iglesias; Mert R Sabuncu
Journal:  Med Image Anal       Date:  2015-07-06       Impact factor: 8.545

5.  Multi-atlas Segmentation Enables Robust Multi-contrast MRI Spleen Segmentation for Splenomegaly.

Authors:  Yuankai Huo; Jiaqi Liu; Zhoubing Xu; Robert L Harrigan; Albert Assad; Richard G Abramson; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2017-02-24

6.  Efficient Abdominal Segmentation on Clinically Acquired CT with SIMPLE Context Learning.

Authors:  Zhoubing Xu; Ryan P Burke; Christopher P Lee; Rebeccah B Baucom; Benjamin K Poulose; Richard G Abramson; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2015-03-20

7.  Improving Cerebellar Segmentation with Statistical Fusion.

Authors:  Andrew J Plassard; Zhen Yang; Jerry L Prince; Daniel O Claassen; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-03-21

8.  Evaluation of Six Registration Methods for the Human Abdomen on Clinically Acquired CT.

Authors:  Zhoubing Xu; Christopher P Lee; Mattias P Heinrich; Marc Modat; Daniel Rueckert; Sebastien Ourselin; Richard G Abramson; Bennett A Landman
Journal:  IEEE Trans Biomed Eng       Date:  2016-06-01       Impact factor: 4.538

9.  Improving Spleen Volume Estimation Via Computer-assisted Segmentation on Clinically Acquired CT Scans.

Authors:  Zhoubing Xu; Adam L Gertz; Ryan P Burke; Neil Bansal; Hakmook Kang; Bennett A Landman; Richard G Abramson
Journal:  Acad Radiol       Date:  2016-08-09       Impact factor: 3.173

  9 in total

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