Literature DB >> 28731724

Concurrent Hydrogenation of Three Functional Groups Enables Synthesis of C3'-Homologated Nucleoside Amino Acids.

Venubabu Kotikam1, Eriks Rozners1.   

Abstract

Internucleoside amide linkages are excellent mimics of phosphodiesters in RNA and may be used to optimize the properties of short interfering RNAs. Herein we report a remarkably straightforward, efficient and step economic synthesis of C3'-homologated uridine and adenosine amino acids starting from nucleosides in six steps (31% overall yield) and eight steps (16% overall yield), respectively. The key enabling step is a one-pot multifunctional group transformation including a stereoselective hydrogenation, termed "Global Hydrogenation".

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Year:  2017        PMID: 28731724      PMCID: PMC7755113          DOI: 10.1021/acs.orglett.7b01934

Source DB:  PubMed          Journal:  Org Lett        ISSN: 1523-7052            Impact factor:   6.005


  24 in total

1.  Monomers for preparation of amide linked RNA: Synthesis of C3'-homologated nucleoside amino acids from d-xylose.

Authors:  Paul Tanui; Martin Kullberg; Ni Song; Yashodhan Chivate; Eriks Rozners
Journal:  Tetrahedron       Date:  2010-07-01       Impact factor: 2.457

2.  Modified RNAs in CRISPR/Cas9: An Old Trick Works Again.

Authors:  Alfonso Latorre; Ana Latorre; Álvaro Somoza
Journal:  Angew Chem Int Ed Engl       Date:  2016-02-16       Impact factor: 15.336

3.  Synthesis and properties of modified siRNA having amide-linked oligoribonucleosides at their 3' overhang regions.

Authors:  Reiko Iwase; Hideo Miyao; Takaaki Toyama; Kengo Nishimori
Journal:  Nucleic Acids Symp Ser (Oxf)       Date:  2006

4.  Solid-phase synthesis of modified RNAs containing amide-linked oligoribonucleosides at their 3'-end and their application to siRNA.

Authors:  Reiko Iwase; Takaaki Toyama; Kengo Nishimori
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2007       Impact factor: 1.381

5.  Chemically modified guide RNAs enhance CRISPR-Cas genome editing in human primary cells.

Authors:  Ayal Hendel; Rasmus O Bak; Joseph T Clark; Andrew B Kennedy; Daniel E Ryan; Subhadeep Roy; Israel Steinfeld; Benjamin D Lunstad; Robert J Kaiser; Alec B Wilkens; Rosa Bacchetta; Anya Tsalenko; Douglas Dellinger; Laurakay Bruhn; Matthew H Porteus
Journal:  Nat Biotechnol       Date:  2015-06-29       Impact factor: 54.908

6.  Glucose-derived 3'-(carboxymethyl)-3'-deoxyribonucleosides and 2', 3'-lactones as synthetic precursors for amide-linked oligonucleotide analogues.

Authors:  M J Robins; B Doboszewski; V A Timoshchuk; M A Peterson
Journal:  J Org Chem       Date:  2000-05-19       Impact factor: 4.354

7.  Amide-Linked Ribonucleoside Dimers Derived from 5'-Amino-5'-deoxy- and 3'-(Carboxymethyl)-3'-deoxynucleoside Precursors(1).

Authors:  Matt A. Peterson; Bradley L. Nilsson; Sanchita Sarker; Bogdan Doboszewski; Weijian Zhang; Morris J. Robins
Journal:  J Org Chem       Date:  1999-10-29       Impact factor: 4.354

8.  Synthesis and properties of RNA analogues having amides as interuridine linkages at selected positions.

Authors:  Eriks Rozners; Dace Katkevica; Erika Bizdena; Roger Strömberg
Journal:  J Am Chem Soc       Date:  2003-10-08       Impact factor: 15.419

9.  Synthesis, biophysical studies and RNA interference activity of RNA having three consecutive amide linkages.

Authors:  Paul Tanui; Scott D Kennedy; Benjamin D Lunstad; Amanda Haas; Devin Leake; Eriks Rozners
Journal:  Org Biomol Chem       Date:  2014-02-28       Impact factor: 3.876

Review 10.  Knocking down disease: a progress report on siRNA therapeutics.

Authors:  Anders Wittrup; Judy Lieberman
Journal:  Nat Rev Genet       Date:  2015-09       Impact factor: 53.242

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  6 in total

1.  Synthesis and Biological Activity of Short Interfering RNAs Having Several Consecutive Amide Internucleoside Linkages.

Authors:  Venubabu Kotikam; Julien A Viel; Eriks Rozners
Journal:  Chemistry       Date:  2019-12-17       Impact factor: 5.236

2.  An LNA-amide modification that enhances the cell uptake and activity of phosphorothioate exon-skipping oligonucleotides.

Authors:  Ysobel R Baker; Cameron Thorpe; Jinfeng Chen; Laura M Poller; Lina Cox; Pawan Kumar; Wooi F Lim; Lillian Lie; Graham McClorey; Sven Epple; Daniel Singleton; Michael A McDonough; Jack S Hardwick; Kirsten E Christensen; Matthew J A Wood; James P Hall; Afaf H El-Sagheer; Tom Brown
Journal:  Nat Commun       Date:  2022-07-12       Impact factor: 17.694

3.  Amide-Modified RNA: Using Protein Backbone to Modulate Function of Short Interfering RNAs.

Authors:  Venubabu Kotikam; Eriks Rozners
Journal:  Acc Chem Res       Date:  2020-07-13       Impact factor: 22.384

4.  Optimization of Automated Synthesis of Amide-Linked RNA.

Authors:  Julien A Viel; Chandan Pal; Eriks Rozners
Journal:  ACS Omega       Date:  2022-05-31

5.  A hydroxamic-acid-containing nucleoside inhibits DNA repair nuclease SNM1A.

Authors:  William Doherty; Eva-Maria Dürr; Hannah T Baddock; Sook Y Lee; Peter J McHugh; Tom Brown; Mathias O Senge; Eoin M Scanlan; Joanna F McGouran
Journal:  Org Biomol Chem       Date:  2019-08-05       Impact factor: 3.876

6.  Design, Synthesis and Molecular Modeling Study of Conjugates of ADP and Morpholino Nucleosides as A Novel Class of Inhibitors of PARP-1, PARP-2 and PARP-3.

Authors:  Yuliya V Sherstyuk; Nikita V Ivanisenko; Alexandra L Zakharenko; Maria V Sukhanova; Roman Y Peshkov; Ilia V Eltsov; Mikhail M Kutuzov; Tatjana A Kurgina; Ekaterina A Belousova; Vladimir A Ivanisenko; Olga I Lavrik; Vladimir N Silnikov; Tatyana V Abramova
Journal:  Int J Mol Sci       Date:  2019-12-27       Impact factor: 5.923

  6 in total

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