Literature DB >> 17150874

Synthesis and properties of modified siRNA having amide-linked oligoribonucleosides at their 3' overhang regions.

Reiko Iwase1, Hideo Miyao, Takaaki Toyama, Kengo Nishimori.   

Abstract

siRNAs against luciferase gene were modified with amide-linked oligoribonucleosides (amide-linked RNA) at their 3'-overhang regions. The modified siRNAs were more stable than the unmodified siRNA against degradation by nuclease S1, which indicates that the modified overhang regions increase the nuclease resistance of the siRNAs. Tm values of the modified siRNAs increased compared with that of the unmodified siRNA. This result suggests that the modified overhang regions stabilize the duplex structure of siRNAs. The modified siRNAs reduced the target gene expression in a similar manner as the unmodified siRNA in living cells. This result indicates that the overhang modifications are tolerated for the inhibition of target gene expression.

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Year:  2006        PMID: 17150874     DOI: 10.1093/nass/nrl087

Source DB:  PubMed          Journal:  Nucleic Acids Symp Ser (Oxf)        ISSN: 0261-3166


  7 in total

1.  Monomers for preparation of amide linked RNA: Synthesis of C3'-homologated nucleoside amino acids from d-xylose.

Authors:  Paul Tanui; Martin Kullberg; Ni Song; Yashodhan Chivate; Eriks Rozners
Journal:  Tetrahedron       Date:  2010-07-01       Impact factor: 2.457

2.  Concurrent Hydrogenation of Three Functional Groups Enables Synthesis of C3'-Homologated Nucleoside Amino Acids.

Authors:  Venubabu Kotikam; Eriks Rozners
Journal:  Org Lett       Date:  2017-07-21       Impact factor: 6.005

3.  Synthesis and Biological Activity of Short Interfering RNAs Having Several Consecutive Amide Internucleoside Linkages.

Authors:  Venubabu Kotikam; Julien A Viel; Eriks Rozners
Journal:  Chemistry       Date:  2019-12-17       Impact factor: 5.236

4.  Synthesis, biophysical studies and RNA interference activity of RNA having three consecutive amide linkages.

Authors:  Paul Tanui; Scott D Kennedy; Benjamin D Lunstad; Amanda Haas; Devin Leake; Eriks Rozners
Journal:  Org Biomol Chem       Date:  2014-02-28       Impact factor: 3.876

5.  Interplay of structure, hydration and thermal stability in formacetal modified oligonucleotides: RNA may tolerate nonionic modifications better than DNA.

Authors:  Andrej Kolarovic; Emma Schweizer; Emily Greene; Mark Gironda; Pradeep S Pallan; Martin Egli; Eriks Rozners
Journal:  J Am Chem Soc       Date:  2009-10-21       Impact factor: 15.419

6.  Optimization of Automated Synthesis of Amide-Linked RNA.

Authors:  Julien A Viel; Chandan Pal; Eriks Rozners
Journal:  ACS Omega       Date:  2022-05-31

7.  Amide linkages mimic phosphates in RNA interactions with proteins and are well tolerated in the guide strand of short interfering RNAs.

Authors:  Daniel Mutisya; Travis Hardcastle; Samwel K Cheruiyot; Pradeep S Pallan; Scott D Kennedy; Martin Egli; Melissa L Kelley; Anja van Brabant Smith; Eriks Rozners
Journal:  Nucleic Acids Res       Date:  2017-08-21       Impact factor: 16.971

  7 in total

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