Literature DB >> 28725878

Segmentation of Gliomas in Pre-operative and Post-operative Multimodal Magnetic Resonance Imaging Volumes Based on a Hybrid Generative-Discriminative Framework.

Ke Zeng1, Spyridon Bakas1, Aristeidis Sotiras1, Hamed Akbari1, Martin Rozycki1, Saima Rathore1, Sarthak Pati1, Christos Davatzikos1.   

Abstract

We present an approach for segmenting both low- and high-grade gliomas in multimodal magnetic resonance imaging volumes. The proposed framework is an extension of our previous work [6,7], with an additional component for segmenting post-operative scans. The proposed approach is based on a hybrid generative-discriminative model. Firstly, a generative model based on a joint segmentation-registration framework is used to segment the brain scans into cancerous and healthy tissues. Secondly, a gradient boosting classification scheme is used to refine tumor segmentation based on information from multiple patients. We evaluated our approach in 218 cases during the training phase of the BRAin Tumor Segmentation (BRATS) 2016 challenge and report promising results. During the testing phase, the proposed approach was ranked among the top performing methods, after being additionally evaluated in 191 unseen cases.

Entities:  

Keywords:  BRATS challenge; Brain tumor; Expectation maximization; Glioma; Gradient boosting; Multimodal MRI; Probabilistic model; Segmentation

Year:  2017        PMID: 28725878      PMCID: PMC5512606          DOI: 10.1007/978-3-319-55524-9_18

Source DB:  PubMed          Journal:  Brainlesion


  24 in total

1.  Fast extraction of minimal paths in 3D images and applications to virtual endoscopy.

Authors:  T Deschamps; L D Cohen
Journal:  Med Image Anal       Date:  2001-12       Impact factor: 8.545

2.  Pattern analysis of dynamic susceptibility contrast-enhanced MR imaging demonstrates peritumoral tissue heterogeneity.

Authors:  Hamed Akbari; Luke Macyszyn; Xiao Da; Ronald L Wolf; Michel Bilello; Ragini Verma; Donald M O'Rourke; Christos Davatzikos
Journal:  Radiology       Date:  2014-06-19       Impact factor: 11.105

3.  New variants of a method of MRI scale standardization.

Authors:  L G Nyúl; J K Udupa; X Zhang
Journal:  IEEE Trans Med Imaging       Date:  2000-02       Impact factor: 10.048

4.  A brain tumor segmentation framework based on outlier detection.

Authors:  Marcel Prastawa; Elizabeth Bullitt; Sean Ho; Guido Gerig
Journal:  Med Image Anal       Date:  2004-09       Impact factor: 8.545

5.  Joint tumor segmentation and dense deformable registration of brain MR images.

Authors:  Sarah Parisot; Hugues Duffau; Stéphane Chemouny; Nikos Paragios
Journal:  Med Image Comput Comput Assist Interv       Date:  2012

6.  An image-driven parameter estimation problem for a reaction-diffusion glioma growth model with mass effects.

Authors:  Cosmina Hogea; Christos Davatzikos; George Biros
Journal:  J Math Biol       Date:  2007-11-17       Impact factor: 2.259

7.  PORTR: Pre-operative and post-recurrence brain tumor registration.

Authors:  Dongjin Kwon; Marc Niethammer; Hamed Akbari; Michel Bilello; Christos Davatzikos; Kilian M Pohl
Journal:  IEEE Trans Med Imaging       Date:  2014-03       Impact factor: 10.048

8.  Brain tumor segmentation with Deep Neural Networks.

Authors:  Mohammad Havaei; Axel Davy; David Warde-Farley; Antoine Biard; Aaron Courville; Yoshua Bengio; Chris Pal; Pierre-Marc Jodoin; Hugo Larochelle
Journal:  Med Image Anal       Date:  2016-05-19       Impact factor: 8.545

9.  Efficient multi-scale 3D CNN with fully connected CRF for accurate brain lesion segmentation.

Authors:  Konstantinos Kamnitsas; Christian Ledig; Virginia F J Newcombe; Joanna P Simpson; Andrew D Kane; David K Menon; Daniel Rueckert; Ben Glocker
Journal:  Med Image Anal       Date:  2016-10-29       Impact factor: 8.545

10.  Decision forests for tissue-specific segmentation of high-grade gliomas in multi-channel MR.

Authors:  Darko Zikic; Ben Glocker; Ender Konukoglu; Antonio Criminisi; C Demiralp; J Shotton; O M Thomas; T Das; R Jena; S J Price
Journal:  Med Image Comput Comput Assist Interv       Date:  2012
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  14 in total

1.  Analyzing magnetic resonance imaging data from glioma patients using deep learning.

Authors:  Bjoern Menze; Fabian Isensee; Roland Wiest; Bene Wiestler; Klaus Maier-Hein; Mauricio Reyes; Spyridon Bakas
Journal:  Comput Med Imaging Graph       Date:  2020-12-02       Impact factor: 4.790

2.  Integrated Biophysical Modeling and Image Analysis: Application to Neuro-Oncology.

Authors:  Andreas Mang; Spyridon Bakas; Shashank Subramanian; Christos Davatzikos; George Biros
Journal:  Annu Rev Biomed Eng       Date:  2020-06-04       Impact factor: 9.590

3.  Overall survival prediction in glioblastoma patients using structural magnetic resonance imaging (MRI): advanced radiomic features may compensate for lack of advanced MRI modalities.

Authors:  Spyridon Bakas; Gaurav Shukla; Hamed Akbari; Guray Erus; Aristeidis Sotiras; Saima Rathore; Chiharu Sako; Sung Min Ha; Martin Rozycki; Russell T Shinohara; Michel Bilello; Christos Davatzikos
Journal:  J Med Imaging (Bellingham)       Date:  2020-06-09

Review 4.  Precision diagnostics based on machine learning-derived imaging signatures.

Authors:  Christos Davatzikos; Aristeidis Sotiras; Yong Fan; Mohamad Habes; Guray Erus; Saima Rathore; Spyridon Bakas; Rhea Chitalia; Aimilia Gastounioti; Despina Kontos
Journal:  Magn Reson Imaging       Date:  2019-05-06       Impact factor: 2.546

5.  Development and Practical Implementation of a Deep Learning-Based Pipeline for Automated Pre- and Postoperative Glioma Segmentation.

Authors:  E Lotan; B Zhang; S Dogra; W D Wang; D Carbone; G Fatterpekar; E K Oermann; Y W Lui
Journal:  AJNR Am J Neuroradiol       Date:  2021-12-02       Impact factor: 3.825

6.  Classification of Infection and Ischemia in Diabetic Foot Ulcers Using VGG Architectures.

Authors:  Orhun Güley; Sarthak Pati; Spyridon Bakas
Journal:  Diabet Foot Ulcers Grand Chall (2021)       Date:  2022-01-01

7.  The Cancer Imaging Phenomics Toolkit (CaPTk): Technical Overview.

Authors:  Sarthak Pati; Ashish Singh; Saima Rathore; Aimilia Gastounioti; Mark Bergman; Phuc Ngo; Sung Min Ha; Dimitrios Bounias; James Minock; Grayson Murphy; Hongming Li; Amit Bhattarai; Adam Wolf; Patmaa Sridaran; Ratheesh Kalarot; Hamed Akbari; Aristeidis Sotiras; Siddhesh P Thakur; Ragini Verma; Russell T Shinohara; Paul Yushkevich; Yong Fan; Despina Kontos; Christos Davatzikos; Spyridon Bakas
Journal:  Brainlesion       Date:  2020-05-19

8.  Cancer imaging phenomics toolkit: quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome.

Authors:  Christos Davatzikos; Saima Rathore; Spyridon Bakas; Sarthak Pati; Mark Bergman; Ratheesh Kalarot; Patmaa Sridharan; Aimilia Gastounioti; Nariman Jahani; Eric Cohen; Hamed Akbari; Birkan Tunc; Jimit Doshi; Drew Parker; Michael Hsieh; Aristeidis Sotiras; Hongming Li; Yangming Ou; Robert K Doot; Michel Bilello; Yong Fan; Russell T Shinohara; Paul Yushkevich; Ragini Verma; Despina Kontos
Journal:  J Med Imaging (Bellingham)       Date:  2018-01-11

9.  Fully-Automated Identification of Imaging Biomarkers for Post-Operative Cerebellar Mutism Syndrome Using Longitudinal Paediatric MRI.

Authors:  Michaela Spiteri; Jean-Yves Guillemaut; David Windridge; Shivaram Avula; Ram Kumar; Emma Lewis
Journal:  Neuroinformatics       Date:  2020-01

10.  Fully automated brain resection cavity delineation for radiation target volume definition in glioblastoma patients using deep learning.

Authors:  Ekin Ermiş; Alain Jungo; Robert Poel; Marcela Blatti-Moreno; Raphael Meier; Urspeter Knecht; Daniel M Aebersold; Michael K Fix; Peter Manser; Mauricio Reyes; Evelyn Herrmann
Journal:  Radiat Oncol       Date:  2020-05-06       Impact factor: 3.481

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