Literature DB >> 28718621

Illuminating the Cell's Biochemical Activity Architecture.

Sohum Mehta1, Jin Zhang1,2.   

Abstract

All cellular behaviors arise through the coordinated actions of numerous intracellular biochemical pathways. Over the past 20 years, efforts to probe intracellular biochemical processes have undergone a fundamental transformation brought about by advances in fluorescence imaging, such as the development of genetically encoded fluorescent reporters and new imaging technologies; the impact of these approaches on our understanding of the molecular underpinnings of biological function cannot be understated. In particular, the ability to obtain information on the spatiotemporal regulation of biochemical processes unfolding in real time in the native context of a living cell has crystallized the view, long a matter of speculation, that cells achieve specific biological outcomes through the imposition of spatial control over the distribution of various biomolecules, and their associated biochemical activities, within the cellular environment. Indeed, the compartmentalization of biochemical activities by cells is now known to be pervasive and to span a multitude of spatial scales, from the length of a cell to just a few enzymes. In this Perspective, part of this special issue on "Seeing into cells", we highlight several recent imaging studies that provide detailed insights into not just where molecules are but where molecules are active within cells, offering a glimpse into the emerging view of biochemical activity architecture as a complement to the physical architecture of a cell.

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Year:  2017        PMID: 28718621      PMCID: PMC6007851          DOI: 10.1021/acs.biochem.7b00561

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  41 in total

Review 1.  AKAP signalling complexes: focal points in space and time.

Authors:  Wei Wong; John D Scott
Journal:  Nat Rev Mol Cell Biol       Date:  2004-12       Impact factor: 94.444

Review 2.  Coordinating ERK/MAPK signalling through scaffolds and inhibitors.

Authors:  Walter Kolch
Journal:  Nat Rev Mol Cell Biol       Date:  2005-11       Impact factor: 94.444

3.  Protein sorting by lipid phase-like domains supports emergent signaling function in B lymphocyte plasma membranes.

Authors:  Matthew B Stone; Sarah A Shelby; Marcos F Núñez; Kathleen Wisser; Sarah L Veatch
Journal:  Elife       Date:  2017-02-01       Impact factor: 8.140

4.  Spatiotemporal Control of Intracellular Phase Transitions Using Light-Activated optoDroplets.

Authors:  Yongdae Shin; Joel Berry; Nicole Pannucci; Mikko P Haataja; Jared E Toettcher; Clifford P Brangwynne
Journal:  Cell       Date:  2016-12-29       Impact factor: 41.582

Review 5.  G protein-coupled receptor (GPCR) signaling via heterotrimeric G proteins from endosomes.

Authors:  Nikoleta G Tsvetanova; Roshanak Irannejad; Mark von Zastrow
Journal:  J Biol Chem       Date:  2015-01-20       Impact factor: 5.157

6.  Phase Transition in Postsynaptic Densities Underlies Formation of Synaptic Complexes and Synaptic Plasticity.

Authors:  Menglong Zeng; Yuan Shang; Yoichi Araki; Tingfeng Guo; Richard L Huganir; Mingjie Zhang
Journal:  Cell       Date:  2016-08-25       Impact factor: 41.582

Review 7.  Optogenetic control of intracellular signaling pathways.

Authors:  Kai Zhang; Bianxiao Cui
Journal:  Trends Biotechnol       Date:  2014-12-17       Impact factor: 19.536

8.  Spatially resolved dynamics of cAMP and protein kinase A subunits in Aplysia sensory neurons.

Authors:  B J Bacskai; B Hochner; M Mahaut-Smith; S R Adams; B K Kaang; E R Kandel; R Y Tsien
Journal:  Science       Date:  1993-04-09       Impact factor: 47.728

9.  Phase transitions in the assembly of multivalent signalling proteins.

Authors:  Pilong Li; Sudeep Banjade; Hui-Chun Cheng; Soyeon Kim; Baoyu Chen; Liang Guo; Marc Llaguno; Javoris V Hollingsworth; David S King; Salman F Banani; Paul S Russo; Qiu-Xing Jiang; B Tracy Nixon; Michael K Rosen
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

10.  Genetically encoded biosensors for visualizing live-cell biochemical activity at super-resolution.

Authors:  Gary C H Mo; Brian Ross; Fabian Hertel; Premashis Manna; Xinxing Yang; Eric Greenwald; Chris Booth; Ashlee M Plummer; Brian Tenner; Zan Chen; Yuxiao Wang; Eileen J Kennedy; Philip A Cole; Karen G Fleming; Amy Palmer; Ralph Jimenez; Jie Xiao; Peter Dedecker; Jin Zhang
Journal:  Nat Methods       Date:  2017-03-13       Impact factor: 28.547

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  5 in total

Review 1.  Genetically Encodable Fluorescent and Bioluminescent Biosensors Light Up Signaling Networks.

Authors:  Xin Zhou; Sohum Mehta; Jin Zhang
Journal:  Trends Biochem Sci       Date:  2020-07-10       Impact factor: 13.807

2.  DrFLINC Contextualizes Super-resolution Activity Imaging.

Authors:  Wei Lin; Gary C H Mo; Sohum Mehta; Jin Zhang
Journal:  J Am Chem Soc       Date:  2021-09-13       Impact factor: 15.419

3.  Spatial regulation of AMPK signaling revealed by a sensitive kinase activity reporter.

Authors:  Danielle L Schmitt; Stephanie D Curtis; Anne C Lyons; Jin-Fan Zhang; Mingyuan Chen; Catherine Y He; Sohum Mehta; Reuben J Shaw; Jin Zhang
Journal:  Nat Commun       Date:  2022-07-05       Impact factor: 17.694

Review 4.  Liquid-liquid phase separation: a principal organizer of the cell's biochemical activity architecture.

Authors:  Jason Z Zhang; Sohum Mehta; Jin Zhang
Journal:  Trends Pharmacol Sci       Date:  2021-08-06       Impact factor: 14.819

5.  Signaling diversity enabled by Rap1-regulated plasma membrane ERK with distinct temporal dynamics.

Authors:  Jeremiah Keyes; Ambhighainath Ganesan; Olivia Molinar-Inglis; Archer Hamidzadeh; Jinfan Zhang; Megan Ling; JoAnn Trejo; Andre Levchenko; Jin Zhang
Journal:  Elife       Date:  2020-05-26       Impact factor: 8.140

  5 in total

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