Literature DB >> 10625424

Solvent mobility and the protein 'glass' transition.

D Vitkup1, D Ringe, G A Petsko, M Karplus.   

Abstract

Proteins and other biomolecules undergo a dynamic transition near 200 K to a glass-like solid state with small atomic fluctuations. This dynamic transition can inhibit biological function. To provide a deeper understanding of the relative importance of solvent mobility and the intrinsic protein energy surface in the transition, a novel molecular dynamics simulation procedure with the protein and solvent at different temperatures has been used. Solvent mobility is shown to be the dominant factor in determining the atomic fluctuations above 180 K, although intrinsic protein effects become important at lower temperatures. The simulations thus complement experimental studies by demonstrating the essential role of solvent in controlling functionally important protein fluctuations.

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Year:  2000        PMID: 10625424     DOI: 10.1038/71231

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  106 in total

1.  The dynamics of protein hydration water: a quantitative comparison of molecular dynamics simulations and neutron-scattering experiments.

Authors:  M Tarek; D J Tobias
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

2.  Radially softening diffusive motions in a globular protein.

Authors:  S Dellerue; A J Petrescu; J C Smith; M C Bellissent-Funel
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

3.  Temperature dependence of protein dynamics: computer simulation analysis of neutron scattering properties.

Authors:  Jennifer A Hayward; Jeremy C Smith
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

4.  Specific protein dynamics near the solvent glass transition assayed by radiation-induced structural changes.

Authors:  M Weik; R B Ravelli; I Silman; J L Sussman; P Gros; J Kroon
Journal:  Protein Sci       Date:  2001-10       Impact factor: 6.725

5.  On the nature of a glassy state of matter in a hydrated protein: Relation to protein function.

Authors:  M M Teeter; A Yamano; B Stec; U Mohanty
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

6.  Solvent dependence of dynamic transitions in protein solutions.

Authors:  V Réat; R Dunn; M Ferrand; J L Finney; R M Daniel; J C Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-29       Impact factor: 11.205

7.  Picosecond internal dynamics of lysozyme as affected by thermal unfolding in nonaqueous environment.

Authors:  A De Francesco; M Marconi; S Cinelli; G Onori; A Paciaroni
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

8.  Molecular dynamics simulations of peptides and proteins with amplified collective motions.

Authors:  Zhiyong Zhang; Yunyu Shi; Haiyan Liu
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

9.  Adhesive-cohesive model for protein compressibility: an alternative perspective on stability.

Authors:  Voichita M Dadarlat; Carol Beth Post
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-24       Impact factor: 11.205

10.  Molecular dynamics decomposition of temperature-dependent elastic neutron scattering by a protein solution.

Authors:  Jennifer A Hayward; John L Finney; Roy M Daniel; Jeremy C Smith
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

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