| Literature DB >> 28697808 |
Sarah Sengstake1,2, Indra L Bergval3,4, Anja R Schuitema3, Jessica L de Beer5, Jody Phelan6, Rina de Zwaan5, Taane G Clark6,7, Dick van Soolingen5, Richard M Anthony3,5.
Abstract
BACKGROUND: The ongoing epidemic of multidrug-resistant tuberculosis (MDR-TB) in Georgia highlights the need for more effective control strategies. A new regimen to treat MDR-TB that includes pyrazinamide (PZA) is currently being evaluated and PZA resistance status will largely influence the success of current and future treatment strategies. PZA susceptibility testing was not routinely performed at the National Reference Laboratory (NRL) in Tbilisi between 2010 and September 2015. We here provide a first insight into the prevalence of PZA resistant TB in this region.Entities:
Keywords: Drug resistance; Mycobacterium tuberculosis; Pyrazinamide; Transmission; pncA
Mesh:
Substances:
Year: 2017 PMID: 28697808 PMCID: PMC5506614 DOI: 10.1186/s12879-017-2594-3
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.090
Fig. 1Flowchart of available information. XDR = extensively drug resistant, MDR = multidrug resistant tuberculosis, INH-R = isoniazid monoresistant, STR-R = streptomycin mono resistant. a = [30]
Summary of pncA polymorphisms of all 57 strains with interpretable PZA DST results
| Strain | Nucleotide | Substitution | DST+[Z]a | MTB lineageb | MLVA 15–9 type | Previously reported | Categoryc |
|---|---|---|---|---|---|---|---|
| 12-14129 | T14C | Ile5Thr | MDR+[R] | Haarlem | 15898-15 | No | − |
| 12–17,889 | A16C | Ile 6 Leu | MDR+[S] | Beijing K1 | 1065–32 | Yes [ | C |
| 12–15893 | T20C | Val7Ala | XDR+[R] | Beijing K1 | 1065–32 | Yes [ | − |
| 12–16359 | T40C | Cys14Arg | MDR+[R] | Beijing V+/CHIN+ | ?-32 | Yes [ | A |
| 13–1786 | G41A | Cys14Tyr | XDR+[R] | Beijing V+/CHIN+ | 100–32 | Yes [ | − |
| 12–16734 | A146C | Asp49Ala | MDR+[R] | Beijing V+/CHIN+ | 100–32 | Yes [ | A |
| 12–16077 | A188C | Asp63Ala | MDR+[R] | Beijing V+/CHIN+ | 100–32 | Yes [ | D |
| 12–16119 | G204 T | Trp68Cys | MDR+[R] | Haarlem | 2943–31 | Yes [ | A |
| 12–17593 | C211T | His71Tyr | MDR+[R] | Beijing V+/CHIN+ | 100–32 | Yes [ | A |
| 12–14879 | A212C | His71Pro | MDR+[R] | Beijing K1 | 94–32 | Yes [ | − |
| 13–774 | A212G | His71Arg | MDR+[R] | Beijing V+/CHIN+ | 1047–32 | Yes [ | A |
| 12–15175 | A212G | His71Arg | M(X)DR+[R] | Beijing K1 | 94–32 | See above | See above |
| 12–13963 | T254G | Leu85Arg | MDR+[R] | Beijing K1 | 407–32 | Yes [ | A |
| 12–14551 | G356 T | Trp119Leu | MDR+[R] | Beijing K1 | 94–32 | Yes [ | − |
| 12–17975 | T389G | Val130Gly | MDR+[R] | Beijing V+/CHIN+ | 9375–32 | Yes [ | A |
| 12–16180 | T412C | Cys138Arg | XDR+[R] | Beijing V+/CHIN+ | 100–32 | Yes [ | A |
| 12–17047 | A422C | Gln141Pro | MDR+[R] | Beijing V+/CHIN+ | 100–135 | Yes [ | A |
| 12–18057 | A422C | Gln141Pro | MDR+[R] | Beijing V+/CHIN+ | 100–32 | See above | See above |
| 12–17736 | A422C | Gln141Pro | MDR+[R] | Beijing V+/CHIN+ | 9368–32 | See above | See above |
| 12–16850 | A422C | Gln141Pro | MDR+[R] | Beijing V+/CHIN+ | other | See above | See above |
| 12–14180 | C425T | Thr142Met | MDR+[R] | Beijing K1 | 94–32 | Yes [ | A |
| 12–18166 | T448:G | Insertion → frameshift | MDR+[R] | Beijing V+/CHIN+ | 100–32 | No | − |
| 13–2219 | wildtype | − | MDR+[S] | LAM | 8013–52 | − | − |
| 12–17795 | wildtype | − | mono-INH+[S] | LAM | 843–52 | − | − |
| 12–16706 | wildtype | − | pan-susceptible + [S] | Beijing K1 | 94–32 | − | − |
| 12–16496 | wildtype | − | mono-INH+[S] | Beijing V+/CHIN+ | 94–32 | − | − |
| 12–16505 | wildtype | − | mono-INH+[S] | Beijing V+/CHIN+ | 407–32 | − | − |
| 12–17231 | wildtype | − | MDR+[S] | Beijing V+/CHIN+ | 94–32 | − | − |
| 12–15460 | wildtype | − | pan-susceptible + [S] | Beijing V+/CHIN+ | 94–32 | − | − |
| 13–56 | wildtype | − | MDR-TB+[S] | Beijing V+/CHIN+ | 100–32 | − | − |
| 12–18360 | wildtype | − | MDR-TB+[S] | Beijing V- | 14852–32 | − | − |
| 12–19069 | wildtype | − | MDR-TB+[S] | Euro-American | 163–15 | − | − |
| 12–18493 | wildtype | − | MDR-TB+[S] | Beijing K1 | 94–32 | − | − |
| 12–15155 | wildtype | − | INHR+[S] | Euro-American | ?-15 | − | − |
| 12–13700 | wildtype | − | INHR+[S] | Haarlem | ?-31 | − | − |
| 13–2072 | wildtype | − | INHR+[S] | Euro-American | 12411–15 | − | − |
| 13–421 | wildtype | − | INHR+[S] | Haarlem | 7361–31 | − | − |
| 12–18490 | wildtype | − | INHR+[S] | Euro-American | 768–26 | − | − |
| 13–172 | wildtype | − | SR+[S] | Beijing V+/CHIN+ | other | − | − |
| 12–15239 | wildtype | − | pan-susceptible + [S] | X | ?-15 | − | − |
| 12–15737 | wildtype | − | pan-susceptible + [S] | CAS | 1059–25 | − | − |
| 12–16196 | wildtype | − | pan-susceptible + [S] | Beijing SA−/CHIN- | 785–32 | − | − |
| 12–18942 | wildtype | − | pan-susceptible + [S] | Beijing K1 | other | − | − |
| 13–1 | wildtype | − | pan-susceptible + [S] | Beijing V+/CHIN+ | other | − | − |
a[Z] = PZA DST, [R] = resistant, [S] = susceptible; b M. tuberculosis lineage according to MLPA; c A = very high confidence resistance mutations, C = mutations with an unclear role, D = mutations not involved in phenotypic resistance according to [10]
Fig. 2Distribution of pncA mutations identified in PZA resistant strains by sequencing and number of mutants per nucleotide polymorphisms
Fig. 3Distribution of pncA polymorphisms among the two largest MLVA clusters 94–32 and 100–32. Among all 57 strains with interpretable PZA DST results four clusters (94–32, 100–32, 407–32 and 1065–32) were identified. Clusters 407–32 and 1065–32 each consisted of two members, all carrying unique pncA mutations and are therefore not depicted in this figure. Distribution of strains with mutations in the pncA gene and their respective percentage in the cluster are listed. The legend indicates the position of the mutation in the pncA gene and the nucleotide change. In cluster 100–32 all but mutation A422C are present in individual isolates. No mutations are shared between the two clusters
Fig. 4UPGMA-tree of isolates with a PZA DST profile. Of all 57 isolates with a PZA DST results, 53 isolates with a valid MIRU-VNTR profile were included