Literature DB >> 28691252

Peptide backbone circularization enhances antifreeze protein thermostability.

Corey A Stevens1, Joanna Semrau1, Dragos Chiriac1, Morgan Litschko1, Robert L Campbell1, David N Langelaan1, Steven P Smith1, Peter L Davies1, John S Allingham1.   

Abstract

Antifreeze proteins (AFPs) are a class of ice-binding proteins that promote survival of a variety of cold-adapted organisms by decreasing the freezing temperature of bodily fluids. A growing number of biomedical, agricultural, and commercial products, such as organs, foods, and industrial fluids, have benefited from the ability of AFPs to control ice crystal growth and prevent ice recrystallization at subzero temperatures. One limitation of AFP use in these latter contexts is their tendency to denature and irreversibly lose activity at the elevated temperatures of certain industrial processing or large-scale AFP production. Using the small, thermolabile type III AFP as a model system, we demonstrate that AFP thermostability is dramatically enhanced via split intein-mediated N- and C-terminal end ligation. To engineer this circular protein, computational modeling and molecular dynamics simulations were applied to identify an extein sequence that would fill the 20-Å gap separating the free ends of the AFP, yet impose little impact on the structure and entropic properties of its ice-binding surface. The top candidate was then expressed in bacteria, and the circularized protein was isolated from the intein domains by ice-affinity purification. This circularized AFP induced bipyramidal ice crystals during ice growth in the hysteresis gap and retained 40% of this activity even after incubation at 100°C for 30 min. NMR analysis implicated enhanced thermostability or refolding capacity of this protein compared to the noncyclized wild-type AFP. These studies support protein backbone circularization as a means to expand the thermostability and practical applications of AFPs.
© 2017 The Protein Society.

Entities:  

Keywords:  antifreeze protein; backbone circularization; freezing hysteresis; protein stability; split intein; thermal stability

Mesh:

Substances:

Year:  2017        PMID: 28691252      PMCID: PMC5606537          DOI: 10.1002/pro.3228

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  43 in total

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Authors:  C P Scott; E Abel-Santos; M Wall; D C Wahnon; S J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

2.  Engineering a naturally inactive isoform of type III antifreeze protein into one that can stop the growth of ice.

Authors:  Christopher P Garnham; Yoshiyuki Nishimiya; Sakae Tsuda; Peter L Davies
Journal:  FEBS Lett       Date:  2012-09-24       Impact factor: 4.124

3.  PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta.

Authors:  Sidhartha Chaudhury; Sergey Lyskov; Jeffrey J Gray
Journal:  Bioinformatics       Date:  2010-01-07       Impact factor: 6.937

4.  Antifreeze protein from shorthorn sculpin: identification of the ice-binding surface.

Authors:  J Baardsnes; M Jelokhani-Niaraki; L H Kondejewski; M J Kuiper; C M Kay; R S Hodges; P L Davies
Journal:  Protein Sci       Date:  2001-12       Impact factor: 6.725

Review 5.  Ice-Binding Proteins and Their Function.

Authors:  Maya Bar Dolev; Ido Braslavsky; Peter L Davies
Journal:  Annu Rev Biochem       Date:  2016-04-25       Impact factor: 23.643

6.  Enhanced protein thermostability from designed mutations that interact with alpha-helix dipoles.

Authors:  H Nicholson; W J Becktel; B W Matthews
Journal:  Nature       Date:  1988-12-15       Impact factor: 49.962

7.  Lack of immunogenicity of ice structuring protein type III HPLC12 preparation administered by the oral route to human volunteers.

Authors:  R W R Crevel; K J Cooper; L K Poulsen; L Hummelshoj; C Bindslev-Jensen; A W Burks; H A Sampson
Journal:  Food Chem Toxicol       Date:  2006-08-22       Impact factor: 6.023

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Incorporation of methyl-protonated valine and leucine residues into deuterated ocean pout type III antifreeze protein: expression, crystallization and preliminary neutron diffraction studies.

Authors:  Isabelle Petit-Haertlein; Matthew P Blakeley; Eduardo Howard; Isabelle Hazemann; Andre Mitschler; Alberto Podjarny; Michael Haertlein
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-05-26

10.  Improvement of texture properties and flavor of frozen dough by carrot (Daucus carota) antifreeze protein supplementation.

Authors:  Chao Zhang; Hui Zhang; Li Wang; Hong Gao; Xiao Na Guo; Hui Yuan Yao
Journal:  J Agric Food Chem       Date:  2007-10-13       Impact factor: 5.279

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  2 in total

Review 1.  Covalently circularized nanodiscs; challenges and applications.

Authors:  Mahmoud L Nasr; Gerhard Wagner
Journal:  Curr Opin Struct Biol       Date:  2018-04-20       Impact factor: 6.809

Review 2.  Antifreeze Proteins and Their Practical Utilization in Industry, Medicine, and Agriculture.

Authors:  Azadeh Eskandari; Thean Chor Leow; Mohd Basyaruddin Abdul Rahman; Siti Nurbaya Oslan
Journal:  Biomolecules       Date:  2020-12-09
  2 in total

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