Literature DB >> 23017208

Engineering a naturally inactive isoform of type III antifreeze protein into one that can stop the growth of ice.

Christopher P Garnham1, Yoshiyuki Nishimiya, Sakae Tsuda, Peter L Davies.   

Abstract

Type III antifreeze proteins (AFPs) can be sub-divided into three classes of isoforms. SP and QAE2 isoforms can slow, but not stop, the growth of ice crystals by binding to pyramidal ice planes. The other class (QAE1) binds both pyramidal and primary prism planes and is able to halt the growth of ice. Here we describe the conversion of a QAE2 isoform into a fully-active QAE1-like isoform by changing four surface-exposed residues to develop a primary prism plane binding site. Molecular dynamics analyses suggest that the basis for gain in antifreeze activity is the formation of ice-like waters on the mutated protein surface.
Copyright © 2012 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 23017208     DOI: 10.1016/j.febslet.2012.09.017

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  9 in total

1.  Peptide backbone circularization enhances antifreeze protein thermostability.

Authors:  Corey A Stevens; Joanna Semrau; Dragos Chiriac; Morgan Litschko; Robert L Campbell; David N Langelaan; Steven P Smith; Peter L Davies; John S Allingham
Journal:  Protein Sci       Date:  2017-07-25       Impact factor: 6.725

2.  NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner.

Authors:  Hiroyuki Kumeta; Kenji Ogura; Yoshiyuki Nishimiya; Ai Miura; Fuyuhiko Inagaki; Sakae Tsuda
Journal:  J Biomol NMR       Date:  2013-01-04       Impact factor: 2.835

3.  Determining the ice-binding planes of antifreeze proteins by fluorescence-based ice plane affinity.

Authors:  Koli Basu; Christopher P Garnham; Yoshiyuki Nishimiya; Sakae Tsuda; Ido Braslavsky; Peter Davies
Journal:  J Vis Exp       Date:  2014-01-15       Impact factor: 1.355

4.  Antifreeze protein dispersion in eelpouts and related fishes reveals migration and climate alteration within the last 20 Ma.

Authors:  Rod S Hobbs; Jennifer R Hall; Laurie A Graham; Peter L Davies; Garth L Fletcher
Journal:  PLoS One       Date:  2020-12-15       Impact factor: 3.240

5.  Comparison of backbone dynamics of the type III antifreeze protein and antifreeze-like domain of human sialic acid synthase.

Authors:  Yong-Geun Choi; Chin-Ju Park; Hee-Eun Kim; Yeo-Jin Seo; Ae-Ree Lee; Seo-Ree Choi; Shim Sung Lee; Joon-Hwa Lee
Journal:  J Biomol NMR       Date:  2015-01-10       Impact factor: 2.835

6.  Prolonging hypothermic storage (4 C) of bovine embryos with fish antifreeze protein.

Authors:  Atsushi Ideta; Yoshito Aoyagi; Kanami Tsuchiya; Yuuki Nakamura; Kou Hayama; Atsushi Shirasawa; Kenichiro Sakaguchi; Naomi Tominaga; Yoshiyuki Nishimiya; Sakae Tsuda
Journal:  J Reprod Dev       Date:  2014-10-10       Impact factor: 2.214

Review 7.  Marine Antifreeze Proteins: Structure, Function, and Application to Cryopreservation as a Potential Cryoprotectant.

Authors:  Hak Jun Kim; Jun Hyuck Lee; Young Baek Hur; Chang Woo Lee; Sun-Ha Park; Bon-Won Koo
Journal:  Mar Drugs       Date:  2017-01-27       Impact factor: 5.118

8.  Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein.

Authors:  Sheikh Mahatabuddin; Daichi Fukami; Tatsuya Arai; Yoshiyuki Nishimiya; Rumi Shimizu; Chie Shibazaki; Hidemasa Kondo; Motoyasu Adachi; Sakae Tsuda
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-07       Impact factor: 11.205

Review 9.  Bacterial ice crystal controlling proteins.

Authors:  Janet S H Lorv; David R Rose; Bernard R Glick
Journal:  Scientifica (Cairo)       Date:  2014-01-20
  9 in total

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