| Literature DB >> 28664278 |
Dawid Szpecht1, Janusz Gadzinowski2, Agnieszka Seremak-Mrozikiewicz3,4, Grażyna Kurzawińska3, Krzysztof Drews3, Marta Szymankiewicz2.
Abstract
INTRODUCTION: Intraventricular hemorrhage (IVH) is a significant morbidity seen in very low birth weight infants. Genes related to inflammation may be risk factors for IVH.Entities:
Keywords: Gene polymorphism; Intraventricular hemorrhage; Preterm neonates
Mesh:
Substances:
Year: 2017 PMID: 28664278 PMCID: PMC5644703 DOI: 10.1007/s00381-017-3458-2
Source DB: PubMed Journal: Childs Nerv Syst ISSN: 0256-7040 Impact factor: 1.475
Description of the five studied polymorphisms in Il-1, Il-6, Il-1RN, and TNFα genes
| Gene symbol | Polymorphism | Sequence of primers | Restriction enzyme | Products |
|---|---|---|---|---|
| IL-1β (rs1143634) | + | F 5′-gTTgTC ATC Aga CTT TgA CC-3′ | TaqI (Thermo Scientific) |
|
| IL-1RN (rs2234663) |
| F 5′-CTC AgC AAC ACT CCT AT-3′ | IL1RN*0 154 bp | |
| IL-6 (rs1800795) | − | F 5′-ACA TgC CAA gTgCTgAgT CA-3′ | LweI (Thermo Scientific) |
|
| IL-6 (rs1800797) | − | F 5′-ggAgTC ACA CAC TCC ACC Tg-3′ | BseGI (BtsCI) (Thermo Scientific) |
|
| TNF-α (rs1800629) | − | 5′-AAA TggAgg CAA Tag gTTTTgAggggCTTg-3′ | FaqI (BsmFI) (Thermo Scientific) | GG 86,45 bp |
Demographic and clinical characteristic of enrolled infants
| Group without IVH | Group with IVH grade 1-4 |
| Group without IVH and with IVH grade 1 and 2 | Group with IVH grade 3–4 |
| |
|---|---|---|---|---|---|---|
| Gender | ||||||
| Male | 29 (52.73) | 25 (55.56) | 0.778a | 47 (52.81) | 7 (63.64) | 0.719b |
| Female | 26 (47.27) | 20 (44.44) | 42 (47.19) | 4 (36.36) | ||
| Gestational age (weeks) | ||||||
| 24 + 0–28 + 6 | 19 (34.55) | 35 (77.78) | 0.00002s | 44 (49.44) | 10 (90.91) | 0.022b |
| 29 + 0–32 + 0 | 36 (65.45) | 10 (22.22) | 45 (50.56) | 1 (9.09) | ||
| Birth weight (g) | ||||||
| <750 | 3 (5.45) | 11 (24.44) | 0.0003a | 12 (13.48) | 2 (18.18) | 0.057a |
| 750–1000 | 10 (18.18) | 17 (37.78) | 21 (23.60) | 6 (54.55) | ||
| >1000 | 42 (76.37) | 17 (37.78) | 56 (62.92) | 3 (27.27) | ||
| Apgar score (median and range) | ||||||
| 1st minute | 6 (1–10) | 4 (1–10) | 0.0001c | 6 (1–10) | 3 (1–7) | 0.054c |
| 5th minute | 8 (5–10) | 7 (1–9) | 0.0005c | 7 (2–10) | 7 (1–8) | 0.009c |
| Mode of delivery | ||||||
| Vaginal | 17 (29.09) | 24 (53.33) | 0.039d | 35 (39.30) | 6 (54.55) | 0.520d |
| Cesarean section | 38 (69.09) | 21 (46.67) | 54 (60.70) | 5 (45.45) | ||
| Asphyxia (pH >7.0 or BE <−12) | ||||||
| Yes | 0 (0.00) | 3 (6.98) | 0.084e | 2 (2.30) | 1 (10.00) | 0.713b |
| No | 54 (100.00) | 40 (93.02) | 85 (97.7) | 9 (90.00) | ||
| Intrauterine infection | ||||||
| Yes | 22 (40.00) | 33 (73.33) | 0.0009a | 46 (51.69) | 9 (81.82) | 0.116b |
| No | 33 (60.00) | 12 (26.67) | 43 (48.31) | 2 (18.18) | ||
| Deaths | 2 (3.63) | 8 (17.77) | 0.038b | 5 (5.6) | 5 (45.45) | 0.0004b |
aChi-square test
bChi-square test with Yates’ correction
cMann–Whitney U test
dFisher–Freeman–Halton test
eFisher’s exact test
Genotype distribution of the five polymorphisms in infants without and with IVH or without/with IVH grades 1–2 and with IVH grades 3–4
| Gene symbol | Group without IVH | Group with IVH grades 1–4 |
| OR | Group without IVH and IVH grade 1 and 2 | Group with IVH grades 3–4 |
| OR |
|---|---|---|---|---|---|---|---|---|
| IL-1β | ||||||||
| Genotype | ||||||||
|
| 32 (58.18) | 30 (66.67) | – | References | 53 (59.55) | 9 (81.82) | – | References |
|
| 19 (34.55) 20.37 | 12 (26.67) | 0.509 | 0.674 (0.253–1.761) | 29 (32.58) | 2 (18.18) | 0.436 | 0.406 (0.040–2.173) |
|
| 4 (7.27) | 3 (6.66) | 1.000 | 0.800 (0.108–5.178) | 7 (7.87) | 0 (0.00) | 0.716 | 0.000 (0.000–4.916) |
| H-W | 0.883 | 0.535 | H-W | 0.579 | 0.946 | |||
| Allele | ||||||||
|
| 83 (75.45) | 72 (80) | – | References | 135 (75.84) | 20 (90.9) | – | References |
|
| 27 (24.55) | 18 (20) | 0.553 | 0.769 (0.367–1.586) | 43 (24.15) | 2 (9.1) | 0.596 | 0.628 (0.148–2.024) |
| Genotype | ||||||||
|
| 28 (50.91) | 22 (48.89) | – | References | 46 (51.69) | 4 (36.36) | – | References |
| IL-1RN | ||||||||
|
| 18 (32.73) | 15 (33.33) | 1.000 | 1.061 (0.398–2.807) | 28 (31.46) | 5 (45.45) | 0.501 | 2.054 (0.401–11.17) |
|
| 1 (1.82) | 1 (2.22) | 1.000 | 1.273 (0.016–103.4) | 2 (2.25) | 0 (0.00) | 1.000 | 0.000 (0.000–71.11) |
|
| 7 (12.73) | 7 (15.51) | 0.920 | 1.273 (0.325–4.957) | 12 (13.48) | 2 (18.18) | 0.785 | 1.917 (0.154–15.15) |
|
| 1 (1.82) | 0 (0.00) | 1.000 | 0.00 (0.00–51.41) | 1 (1.12) | 0 (0.00) | 1.000 | 0.000 (0.000–458.3) |
| H-W | 0.368 | 0.317 | H-W | 0.106 | 0.981 | |||
| Allele | ||||||||
|
| 75 (68.18) | 60 (66.66) | – | References | 122 (68.53) | 13 (59.1) | – | References |
|
| 33 (30) | 29 (32.22) | 0.879 | 1.098 (0.573–2.097) | 53 (29.77) | 9 (40.9) | 0.437 | 1.594 |
|
| 2 (1.81) | 1 (1.11) | 1.000 | 0.625 (0.010–12.31) | 3 (1.68) | 0 | 1.000 | 0.00 |
| IL-6 | ||||||||
| Genotype | ||||||||
|
| 13 (23.64) | 8 (17.78) | – | References | 19 (21.35) | 2 (18.18) | – | References |
|
| 33 (60.00) | 28 (62.22) | 0.718 | 1.379 (0.450–4.416) |
52 (58.43)
| 9 (81.82) | 0.850 | 1.644 (0.298–16.9) |
|
| 9 (16.36) | 9 (20.00) | 0.672 | 1.625 (0.379–7.013) |
18 (20.22)
|
0 (0.00)
| 0.567 | 0.000 (0.000–6.185) |
| H-W | 0.209 | 0.081 | H–W | 0.282 | 0.072 | |||
| Allele | ||||||||
|
| 59 (53.63) | 44 (48.88) | – | References | 90 (50.56) | 13 (59.1) | – | References |
|
| 51 (46.36) | 46 (51.11) | 0.599 | 1.209 (0.667–2.195) | 88 (49.43) | 9 (40.9) | 0.599 | 0.708 (0.254–1.899) |
| IL-6 | ||||||||
| Genotype | ||||||||
|
| 15 (27.28) | 8 (17.78) | – | References |
21 (23.60)
|
2 (18.18)
| – | References |
|
| 31 (56.36) | 29 (64.44) | 0.388 | 1.754 (0.587–5.504) |
51 (57.30)
|
9 (81.82)
| 0.721 | 1.853 (0.338–18.93) |
|
| 9 (16.36) | 8 (17.78) | 0.647 | 1.667 (0.384–7.223) | 17 (19.10) 20.29 |
0 (0.00)
| 0.649 | 0.000 (0.000–7.201) |
| H-W | 0.579 | 0.153 | H–W | 0.375 | 0.072 | |||
| Allele | ||||||||
|
| 61 (55.45) | 45 (50) | – | References | 93 (52.24) | 13 (59.1) | – | References |
|
| 49 (44.55) | 45 (50) | 0.531 |
1.245
| 85 (47.75) | 9 (40.9) | 0.707 | 0.758 (0.271–2.031) |
| TNF-α | ||||||||
| Genotype | ||||||||
|
| 42 (76.36) | 35 (77.78) | – | References |
69 (77.53)
|
8 (72.73)
| – | References |
|
| 13 (23.64) | 10 (22.22) | 1.000 | 0.923 (0.320–2.603) |
20 (22.47)
|
3 (27.27)
| 0.973 | 1.294 (0.202–60.51) |
|
| 0 (0.00) | 0 (0.00) | – | – |
0 (0.00)
|
0 (0.00)
| – | – |
| H-W | 0.610 | 0.704 | 0.490 | 0.872 | ||||
| Allele | ||||||||
|
| 97 (88.18) | 80 (88.88) | – | References | 158 (88.76) | 19 (86.36) | – | References |
|
| 13 (11.82) | 10 (11.11) | 1.000 | 0.933 (0.346–2.443) | 20 (11.23) | 3 (13.63) | 0.957 | 1.247 (0.217–4.823) |
Obs observed, Exp expected (genotype frequencies calculated from allele frequencies with the Hardy–Weinberg (H-W) equation)
Genotype distribution of polymorphisms in infants born 24 + 0–28 + 6 weeks of gestation without and with IVH or without/with IVH grades 1–2 and with IVH grades 3–4
| Gene symbol | Group without IVH | Exp | Group with IVH grades 1–4 | Exp |
| OR | Group without IVH and IVH grade 1 and 2 | Exp | Group with IVH grades 3–4 | Exp |
| OR |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL-1β | ||||||||||||
| Genotypes | ||||||||||||
|
| 10 (52.63) | 10.32 | 25 (71.43) | 24.03 | – | References | 27 (61.36) | 26.27 | 8 (80.00) | 8.10 | – | References |
|
| 8 (42.11) | 7.37 | 8 (22.86) | 9.94 | 0.243 | 0.4 | 14 (31.82) | 15.45 | 2 (20.00) | 1.80 | 0.648 | 0.482 |
|
| 1 (5.26) | 1.32 | 2 (5.71) | 1.03 | 1.000 | 0.8 | 3 (6.82) | 2.27 | 0 (0.00) | 0.10 | 0.963 | 0 |
| H-W | 0.933 | 0.513 | 0.823 | 0.940 | ||||||||
| Allele | ||||||||||||
|
| 28 (73.68%) | 58 (82.85%) | – | References | 68 (77.27%) | 18 (90%) | – | References | ||||
|
| 10 (26.31%) | 12 (17.15%) | 0.377 | 0.579 | 20 (22.72%) | 2 (10%) | 0.442 | 0.425 | ||||
| IL-1RN | ||||||||||||
| Genotypes | ||||||||||||
|
| 9 (47.37) | 6.72 | 18 (51.43) | 16.46 | – | References | 24 (54.55) | 20.24 | 3 (30.00) | 3.03 | – | References |
|
| 4 (21.05) | 8.56 | 12 (34.29) | 15.09 | 0.827 | 1.5 | 11 (25.00) | 18.52 | 5 (50.00) | 4.95 | 0.219 | 3.636 |
|
| 0 (0.00) | 0 (0.00) | – | – | 0 (0.00) | 0 (0.00) | – | – | ||||
|
| 5 (26.32) | 2.72 | 5 (14.29) | 3.46 | 0.579 | 0.5 | 8 (18.18) | 4.24 | 2 (20.00) | 2.03 | 0.824 | 2 |
|
| 1 (5.26) | 0 (0.00) | 0.714 | 0 | 1 (2.27) | 0 (0.00) | 1.000 | 0 | ||||
| H-W | 0.078 | 0.481 | 0.029 | 0.999 | ||||||||
| Allele | ||||||||||||
|
| 22 (57.89%) | 48 (61.53%) | – | References | 59 (67.04%) | 11 (55%) | – | References | ||||
|
| 15 (39.47%) | 22 (38.46%) | 0.464 | 0.672 | 28 (31.81%) | 9 (45%) | 0.368 | 0.383 | ||||
|
| 1 (2.63%) | 0 | 0.648 | 0.000 | 1 (1.13%) | 0 | 1.000 | 0.000 | ||||
| IL-6 | ||||||||||||
| Genotypes | ||||||||||||
|
| 6 (31.58) | 7.58 | 5 (14.29) | 9.26 | – | References | 9 (20.45) | 13.09 | 2 (20.00) | 3.60 | – | References |
|
| 12 (63.16) | 8.84 | 26 (74.29) | 17.49 | 0.300 |
2.6
| 30 (68.19) | 21.82 | 8 (80.00) | 4.80 | 1.000 |
1.2
|
|
| 1 (5.26) | 2.58 | 4 (11.43) | 8.26 | 0.462 |
4.8
| 5 (11.36) | 9.09 | 0 (0.00) | 1.60 | 0.917 |
0
|
| H-W | 0.298 | 0.016 | 0.045 | 0.108 | ||||||||
| Allele | ||||||||||||
|
| 24 (63.15%) | 36 (51.42%) | – | References | 48 (54.54%) | 12 (60%) | – | References | ||||
|
| 14 (36.84%) | 34 (48.57%) | 0.333 |
1.619
| 40 (45.45%) | 8 (40%) | 0.808 |
0.764
| ||||
| IL-6 | ||||||||||||
| Genotypes | ||||||||||||
|
| 6 (31.58) | 7.58 | 5 (14.29) | 9.78 | – | References | 9 (20.45) | 13.64 | 2 (20.00) | 3.60 | – | References |
|
| 12 (63.16) | 8.84 | 27 (77.14) | 17.44 | 0.274 |
2.7
| 31 (70.45) | 21.72 | 8 (80.00) | 4.80 | 1.000 |
1.161
|
|
| 1 (5.26) | 2.58 | 3 (8.57) | 7.78 | 0.677 |
3.6
| 4 (9.10) | 8.64 | 0 (0.00) | 1.60 | 1.000 |
0
|
| H-W | 0.298 | 0.005 | 0.018 | 0.108 | ||||||||
| Allele | ||||||||||||
|
| 24 (63.15%) | 37 (52.85%) | – | References | 49 (55.68%) | 12 (60%) | – | References | ||||
|
| 14 (36.84%) | 33 (47.14%) | 0.408 |
1.529
| 39 (44.31%) | 8 (40%) | 0.838 |
0.779
| ||||
| TNF-α | ||||||||||||
| Genotypes | ||||||||||||
|
| 16 (84.21) | 16.12 | 28 (80.00) | 28.35 | – | References | 36 (81.82) | 36.36 | 8 (80.00) | 8.10 | – | References |
|
| 3 (15.79) | 2.76 | 7 (20.00) | 6.30 | 1.000 |
1.333
| 8 (18.18) | 7.27 | 2 (20.00) | 1.80 | 1.000 |
1.125
|
|
| 0 (0.00) | 0.12 | 0 (0.00) | 0.35 | – | – | 0 (0.00) | 0.36 | 0 (0.00) | 0.10 | – | – |
| H-W | 0.933 | 0.806 | 0.803 | 0.940 | ||||||||
| Allele | ||||||||||||
|
| 35 (92.1%) | 63 (90%) | – | References | 80 (90.9%) | 18 (90%) | – | References | ||||
|
| 3 (2.63%) | 7 (10%) | 1.000 |
1.296
| 8 (9.1%) | 2 (10%) | 1.000 |
1.25
| ||||
N observed, Exp expected (genotype frequencies calculated from allele frequencies with the Hardy–Weinberg (H-W) equation)
Genotype distribution of the polymorphisms in infected and non-infected infants with IVH grades 1–4 or with IVH grades 3–4
| Gene symbol | Group with IVH 1–4 infected | Exp | Group with IVH 1–4 non-infected | Exp |
| OR | Group with IVH 3–4 infected | Exp | Group with IVH 3–4 non-infected | Exp |
| OR |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL-1β +3953C>T | ||||||||||||
| Genotypes | ||||||||||||
|
| 22 (66.67) | 21.28 | 8 (66.67) | 7.52 | – | References | 7 (77.78) | 7.11 | 2 (100.0) | 2 | – | References |
|
| 9 (27.27) | 10.44 | 3 (25.00) | 3.96 | 1.000 | 1.091 (0.196–7.820) | 2 (22.22) | 1.78 | 0 (0.00) | 0 | – | – |
|
| 2 (6.06) | 1.28 | 1 (8.33) | 0.52 | 1.000 | 0.727 (0.034–48.21) | 0 (0.00) | 0.11 | 0 (0.00) | 0 | – | – |
| H-W | 0.731 | 0.703 | H–W | 0.932 | – | |||||||
| Allele | ||||||||||||
|
| 53 (80.30) | 19 (79.17) | – | References | 16 (88.89) | 6 (75.00) | – | References | ||||
|
| 13 (19.70) | 5 (20.83) | 1.000 | 0.932 (0.265–3.797) | 2 (11.11) | 2 (25.00) | 0.717 | 0.375 (0.023–6.531) | ||||
| Genotypes | ||||||||||||
|
| 15 (45.45) | 12.73 | 7 (58.33) | 7.36 | – | References | 3 (33.33) | 2.78 | 1 (50.00) | 1.13 | – | References |
| IL -1RN | ||||||||||||
|
| 11 (33.33) | 15.53 | 4 (33.33) | 3.27 | 1.000 | 1.283 (0.246–7.497) | 4 (44.44) | 4.44 | 1 (50.00) | 0.75 | 1.000 | 1.333 (0.013–130.5) |
|
| 0 (0.00) | 1 (8.33) | 0.696 | 0.000 (0.000–20.80) | 0 (0.00) | 0 (0.00) | – | – | ||||
|
| 7 (21.21) | 4.73 | 0 (0.00) | 0.36 | – | – | 2 (22.22) | 1.78 | 0 (0.00) | 0.13 | – | – |
| IL-1RN (rs2234663) | 0 (0.00) | 0 (0.00) | – | – | 0 (0.00) | 0 (0.00) | – | – | ||||
| H-W | 0.246 | 0.762 | 0.956 | 0.895 | ||||||||
| Allele | ||||||||||||
|
| 41 (61.19) | 19 (82.61) | – | References | 10 (55.56) | 3 (75.00) | – | References | ||||
|
| 25 (38.81) | 4 (17.39) | 0.115 | 2.896 (0.819–12.92) | 8 (44.44) | 1 (25.00) | 0.899 | 2.4 (0.150–141.5) | ||||
|
| 0 (0.00) | 0 (0.00) | – | – | 0 (0.00) | 0 (0.00) | – | – | ||||
| IL-6− | ||||||||||||
| Genotypes | ||||||||||||
|
| 5 (15.15) | 7.28 | 3 (25.00) | 3.52 | – | References | 1 (11.11) | 2.78 | 1 (50.00) | 1.13 | – | References |
|
| 21 (63.64) | 16.44 | 7 (58.33) | 5.96 | 0.777 | 1.800 (0.218–12.22) | 8 (88.89) | 4.44 | 1 (50.00) | 0.75 | 0.691 | 8 (0.051–704) |
|
| 7 (21.21) | 9.28 | 2 (16.67) | 2.52 | 0.873 | 2.1 (0.162–32.92) | 0 (0.00) | 1.78 | 0 (0.00) | 0.13 | – | – |
| H-W | 0.281 | 0.832 | H–W | 0.056 | 0.895 | |||||||
| Allele | ||||||||||||
|
| 31 (46.97) | 13 (54.17) | – | References | 10 (55.56) | 3 (75.00) | – | References | ||||
|
| 35 (53.03) | 11 (45.83) | 0.715 | 1.334 (0.472–3.810) | 8 (44.44) | 1 (25.00) | 0.899 | 2.4 (0.150–141.5) | ||||
| IL-6− | ||||||||||||
| Genotypes | ||||||||||||
|
| 5 (15.15) | 7.28 | 3 (25.00) | 4.08 | – | References | 1 (11.11) | 2.78 | 1 (50.00) | 1.13 | – | References |
|
| 21 (63.64) | 16.44 | 8 (66.67) | 5.83 | 0.888 | 1.575 (0.196–10.42) | 8 (88.89) | 4.44 | 1 (50.00) | 0.75 | 0.691 | 8 (0.051–704) |
|
| 7 (21.21) | 9.28 | 1 (8.33) | 2.08 | 0.569 | 4.2 (0.227–251.3) | 0 (0.00) | 1.78 | 0 (0.00) | 0.13 | – | – |
| H-W | 0.281 | 0.437 | 0.056 | 0.895 | ||||||||
| Allele | ||||||||||||
|
| 31 (46.97) | 14 (58.33) | – | References | 10 (55.56) | 3 (75.00) | – | References | ||||
|
| 35 (53.03) | 10 (41.67) | 0.475 | 1.581 (0.557–4.583) | 8 (44.44) | 1 (25.00) | 0.899 | 2.4 (0.150–141.5) | ||||
| TNF-α | ||||||||||||
| Genotypes | ||||||||||||
|
| 26 (78.79) | 26.37 | 9 (75.00) | 9.19 | – | References | 7 (77.78) | 7.11 | 1 (50.00) | 1.13 | – | References |
|
| 7 (21.21) | 6.26 | 3 (25.00) | 2.63 | 1.000 | 0.808 (0.142–5.898) | 2 (22.22) | 1.78 | 1 (50.00) | 0.75 | 0.982 | 0.286 (0.003–33.55) |
|
| 0 (0.00) | 0.37 | 0 (0.00) | 0.19 | – | – | 0 (0.00) | 0.11 | 0 (0.00) | 0.13 | – | – |
| H-W | 0.793 | 0.885 | 0.932 | 0.895 | ||||||||
| Allele | ||||||||||||
|
| 59 (89.39) | 21 (87.50) | – | References | 16 (88.89) | 3 (75.00) | – | References | ||||
|
| 7 (10.61) | 3 (12.50) | 1.000 | 0.831 (0.169–5.441) | 2 (11.11) | 1 (25.00) | 0.940 | 0.375 (0.015–29.43) | ||||
N observed, Exp expected (genotype frequencies calculated from allele frequencies with the Hardy–Weinberg (H-W) equation)