| Literature DB >> 32285152 |
Dawid Szpecht1, Salwan R Al-Saad2, Lukasz M Karbowski2, Katarzyna Kosik3, Grażyna Kurzawińska4, Marta Szymankiewicz3, Krzysztof Drews4, Agnieszka Seremak-Mrozikiewicz4.
Abstract
BACKGROUND/Entities:
Keywords: Fibronectin-1; Intraventricular hemorrhage; Polymorphism genes; Preterm infants
Mesh:
Substances:
Year: 2020 PMID: 32285152 PMCID: PMC7355268 DOI: 10.1007/s00381-020-04598-3
Source DB: PubMed Journal: Childs Nerv Syst ISSN: 0256-7040 Impact factor: 1.475
Description of studied polymorphisms
| Polymorphism | Sequence of primers | Literature | Products |
|---|---|---|---|
5’-ACC AAT gCCAgg ATT CAg Ag-3’ 5’-CCC AAC TTA ggCATgAgA gC-3’ | Untergasser et al. (2012) | AluI | |
5’-gTT TgTTgTgTCAgTgTA gTA-3’ 5’-TgC ATT AgCgTTATggCCATg-3’ | Avila et al. (1999) | TaqI | |
5’-CAg TCC CAg ATC ATggAg TCT-3’ 5’-gTA CCA TgT TAC TTgTgg AAT AgA g-3’ | Murat et al. (2015) | HindIII | |
5’-CTC AggACTTggATggTgTAg A-3’ 5’-TCA TTT CCC AAT AAA AgT ACA CTg-3’ | Murat et al. (2015) | HaeIII | |
5’-ACT gAAgTg CTC gggATg AT-3’ 5’-CAg gAACgA AAT gTTggA Tg-3’ | Murat et al. (2015) | MspI |
Demographic and clinical characteristics of enrolled infants
| Group without IVH and I | Group with IVH | ||
|---|---|---|---|
| Gender | 0.08666a | ||
| Male | 39 (52%) | 23 (69.7%) | |
| Female | 36 (48%) | 10 (30.3%) | |
| Gestational age (week) | 0.00003a | ||
| 24 + 0–28 + 6 | 31 (41.3%) | 28 (84.8%) | |
| 29 + 0–32 + 0 | 44 (68.7%) | 5 (15.2%) | |
| Birth weight (gram) | 0.00007a | ||
| < 750 | 5 (6.70%) | 9 (27.3%) | |
| 750–1000 | 17 (22.7%) | 15 (45.4%) | |
| > 1000 | 53 (70.6%) | 9 (27.3%) | |
| Apgar score (Median and range) | |||
| 1st minute | 6 (1–10) | 4 (1–10) | 0.000127d |
| 5th minute | 8 (2–10) | 7 (1–9) | 0.000240d |
| Mode of delivery | 0.1252a | ||
| Vaginal | 29 (38.7%) | 18 (54.5%) | |
| Cesarean section | 46 (61.3%) | 15 (45.5%) | |
| pH | 7.33 (7.02–7.53) | 7.29 (6.98–7.51) | 0.12624d |
| BE | − 2.65 (− 14.7–+ 10.6) | −2.8 (− 10.7–+ 0.8) | 0.538729d |
| Intrauterine infection | 0.009a | ||
| YES | 39 (52%) | 26 (78.8%) | |
| NO | 36 (48%) | 7 (21.2%) | |
| Inborn | 68 (90.7%) | 28 (84.8%) | 0.57964c |
| Outborn | 7 (9.3%) | 5 (15.2%) | |
| Deaths | 0.001c | ||
| YES | 4 (5.3%) | 10 (30.3%) | |
| NO | 71 (94.7%) | 23 (69.7%) | |
aChi-square test; b, Fisher Freeman Halton test; c, Chi-square test with Yate’s correction; d, Mann Whitney test
Genotype and Allele distribution of infants
| Gene symbol | Group without IVH | Group with IVH grade I- IV | OR | Group without IVH and IVH I | Group with IVH grade II- IV | OR | |||
|---|---|---|---|---|---|---|---|---|---|
| FN1 rs3796123 | Genotype | ||||||||
| AA | 30 (52.63) | 29 (56.86) | - | References | 40 (53.33) | 19 (57.58) | - | References | |
| AT | 23 (40.35) | 19 (37.25) | 0,853 | 0,854 (0.358-2.033) | 30 (40.00) | 12 (36.36) | 0.868 | 0,842 (0.320–2.163) | |
| TT | 4 (7.02) | 3 (5.88) | 1000 | 0,776 (0.105–5.046) | 5 (6.67) | 2 (6.06) | 1000 | 0.842 (0.074–5.757) | |
| Allele | |||||||||
| A | 83 (72.81) | 77 (75.49) | - | References | 110 (73.33) | 50 (75.76) | - | References | |
| T | 31 (27.19) | 25 (24.51) | 0,770 | 0.869 (0.449–1674) | 40 (26.67) | 16 (24.24) | 0.845 | 0.880 (0.419–1790) | |
| FN1 rs1968510 | Genotype | ||||||||
| GG | 49 (85.96) | 46 (90.20) | - | References | 66 (88.00) | 29 (87.88) | - | References | |
| GA | 7 (12.28) | 5 (9.80) | 0.896 | 0.761 (0.178–3.02) | 8 (10.67) | 4 (12.12) | 1.000 | 1.138 (0.232–4.663) | |
| AA | 1 (1.75) | 0 (0.00) | 1.000 | 0 (0–42.39) | 1 (1.33) | 0 (0.00) | 1.000 | 0.000 (0.000–90.1) | |
| Allele | |||||||||
| G | 105 (92.11) | 97 (95.10) | - | References | 140 (93.33) | 62 (93.94) | - | References | |
| A | 9 (7.89) | 5 (4.90) | 0.542 | 0.604 (0.153–2.086) | 10 (6.67) | 4 (6.06) | 1.000 | 0.903 (0.199–3.286) | |
| FN1 s10202709 | Genotype | ||||||||
| CC | 40 (70.18) | 34 (66.67) | - | References | 55 (73.33) | 19 (57.58) | - | References | |
| CT | 16 (28.07) | 11 (21.57) | 0.814 | 0.809 (0.296–2.154) | 18 (24.00) | 9 (27.27) | 0.602 | 1.447 (0.485–4.105) | |
| TT | 1 (1.75) | 6 (11.76) | 0.101 | 7.059 (0.779–332.6) | 2 (2.67) | 5 (15.15) | 0.044 | 7.237 (1.046–79.59) | |
| Allele | |||||||||
| C | 96 (84.21) | 79 (77.45) | - | References | 128 (85.33) | 47 (71.21) | - | References | |
| T | 18 (15.79) | 23 (22.55) | 0.275 | 1.553 (0.741–3.284) | 22 (14.67) | 19 (28.79) | 0.027 | 2.352 (1.093–4.999) | |
| FN1 rs6725958 | Genotype | ||||||||
| CC | 17 (29.82) | 17 (33.33) | - | References | 21 (28.00) | 13 (39.39) | - | References | |
| AC | 22 (38.60) | 23 (45.10) | 1.000 | 1.045 (0.391–2.796) | 30 (40.00) | 15 (45.45) | 0.829 | 0.808 (0.289–2.274) | |
| AA | 18 (31.58) | 11 (21.57) | 0.481 | 0.611 (0.197–1.871) | 24 (32.00) | 5 (15.15) | 0.117 | 0.336 (0.081–1.241) | |
| Allele | |||||||||
| C | 56 (49.12%) | 57 (55.88%) | - | References | 72 (48.00) | 41 (62.12) | - | References | |
| A | 58 (50.88%) | 45 (44.12%) | 0.392 | 0.762 (0.430–1.349) | 78 (52.00) | 25 (37.88) | 0,077 | 0.563 (0,297–1.057) | |
| FN1 s35343655 | Genotype | ||||||||
| GG | 35 (61.40) | 31 (60.78) | - | References | 46 (61.33) | 20 (60.61) | - | References | |
| GA | 17 (29.82) | 17 (33.33) | 0.939 | 1.129 (0,454–2.805) | 23 (30.67) | 11 (33.33) | 1.000 | 1.1 (0.403–2.903) | |
| AA | 5 (8.77) | 3 (5.88) | 0.903 | 0.677 (0.098–3.833) | 6 (8.00) | 2 (6.06) | 1.000 | 0.767 (0.070–4.803) | |
| Allele | |||||||||
| G | 87 (76.32) | 79 (77.45) | - | References | 115 (76.67) | 51 (77.27) | - | References | |
| A | 27 (23.68) | 23 (22.55) | 0.973 | 0.938 (0.472–1.855) | 35 (23.33) | 15 (22.73) | 1.000 | 0.966 (0.449–2.009) | |