Literature DB >> 28642436

Metalloprotein entatic control of ligand-metal bonds quantified by ultrafast x-ray spectroscopy.

Michael W Mara1,2, Ryan G Hadt1, Marco Eli Reinhard3, Thomas Kroll2,4, Hyeongtaek Lim1,2, Robert W Hartsock3, Roberto Alonso-Mori4, Matthieu Chollet4, James M Glownia4, Silke Nelson4, Dimosthenis Sokaras2,4, Kristjan Kunnus3, Keith O Hodgson1,2, Britt Hedman2, Uwe Bergmann3,4, Kelly J Gaffney2,3, Edward I Solomon5,2.   

Abstract

The multifunctional protein cytochrome c (cyt c) plays key roles in electron transport and apoptosis, switching function by modulating bonding between a heme iron and the sulfur in a methionine residue. This Fe-S(Met) bond is too weak to persist in the absence of protein constraints. We ruptured the bond in ferrous cyt c using an optical laser pulse and monitored the bond reformation within the protein active site using ultrafast x-ray pulses from an x-ray free-electron laser, determining that the Fe-S(Met) bond enthalpy is ~4 kcal/mol stronger than in the absence of protein constraints. The 4 kcal/mol is comparable with calculations of stabilization effects in other systems, demonstrating how biological systems use an entatic state for modest yet accessible energetics to modulate chemical function.
Copyright © 2017 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2017        PMID: 28642436      PMCID: PMC5706643          DOI: 10.1126/science.aam6203

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  30 in total

1.  Geometrical fitting of experimental XANES spectra by a full multiple-scattering procedure.

Authors:  M Benfatto; S Della Longa
Journal:  J Synchrotron Radiat       Date:  2001-07-01       Impact factor: 2.616

2.  Investigations of the thermal response of laser-excited biomolecules.

Authors:  P Li; P M Champion
Journal:  Biophys J       Date:  1994-02       Impact factor: 4.033

3.  Phospholipid-cytochrome c interaction: evidence for the extended lipid anchorage.

Authors:  Esa K J Tuominen; Carmichael J A Wallace; Paavo K J Kinnunen
Journal:  J Biol Chem       Date:  2002-01-07       Impact factor: 5.157

4.  The active site of low-temperature methane hydroxylation in iron-containing zeolites.

Authors:  Benjamin E R Snyder; Pieter Vanelderen; Max L Bols; Simon D Hallaert; Lars H Böttger; Liviu Ungur; Kristine Pierloot; Robert A Schoonheydt; Bert F Sels; Edward I Solomon
Journal:  Nature       Date:  2016-08-18       Impact factor: 49.962

5.  Cytochrome c Can Form a Well-Defined Binding Pocket for Hydrocarbons.

Authors:  Levi J McClelland; Harmen B B Steele; Frank G Whitby; Tung-Chung Mou; David Holley; J B Alexander Ross; Stephen R Sprang; Bruce E Bowler
Journal:  J Am Chem Soc       Date:  2016-12-19       Impact factor: 15.419

6.  Autoxidation of Reduced Horse Heart Cytochrome c Catalyzed by Cardiolipin-Containing Membranes.

Authors:  Lee Serpas; Bridget Milorey; Leah A Pandiscia; Anthony W Addison; Reinhard Schweitzer-Stenner
Journal:  J Phys Chem B       Date:  2016-11-23       Impact factor: 2.991

7.  Cytochrome c acts as a cardiolipin oxygenase required for release of proapoptotic factors.

Authors:  Valerian E Kagan; Vladimir A Tyurin; Jianfei Jiang; Yulia Y Tyurina; Vladimir B Ritov; Andrew A Amoscato; Anatoly N Osipov; Natalia A Belikova; Alexandr A Kapralov; Vidisha Kini; Irina I Vlasova; Qing Zhao; Meimei Zou; Peter Di; Dimitry A Svistunenko; Igor V Kurnikov; Gregory G Borisenko
Journal:  Nat Chem Biol       Date:  2005-08-14       Impact factor: 15.040

8.  Axial ligand replacement in horse heart cytochrome c by semisynthesis.

Authors:  A L Raphael; H B Gray
Journal:  Proteins       Date:  1989

9.  Tracking excited-state charge and spin dynamics in iron coordination complexes.

Authors:  Wenkai Zhang; Roberto Alonso-Mori; Uwe Bergmann; Christian Bressler; Matthieu Chollet; Andreas Galler; Wojciech Gawelda; Ryan G Hadt; Robert W Hartsock; Thomas Kroll; Kasper S Kjær; Katharina Kubiček; Henrik T Lemke; Huiyang W Liang; Drew A Meyer; Martin M Nielsen; Carola Purser; Joseph S Robinson; Edward I Solomon; Zheng Sun; Dimosthenis Sokaras; Tim B van Driel; György Vankó; Tsu-Chien Weng; Diling Zhu; Kelly J Gaffney
Journal:  Nature       Date:  2014-05-07       Impact factor: 49.962

Review 10.  The role of key residues in structure, function, and stability of cytochrome-c.

Authors:  Sobia Zaidi; Md Imtaiyaz Hassan; Asimul Islam; Faizan Ahmad
Journal:  Cell Mol Life Sci       Date:  2013-04-25       Impact factor: 9.261

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  26 in total

1.  Electronic State of the His/Tyr-Ligated Heme of BthA by Mössbauer and DFT Analysis.

Authors:  Andrew C Weitz; Saborni Biswas; Kim Rizzolo; Sean Elliott; Emile L Bominaar; Michael P Hendrich
Journal:  Inorg Chem       Date:  2020-06-30       Impact factor: 5.165

2.  Genetically programmed chiral organoborane synthesis.

Authors:  S B Jennifer Kan; Xiongyi Huang; Yosephine Gumulya; Kai Chen; Frances H Arnold
Journal:  Nature       Date:  2017-11-29       Impact factor: 49.962

3.  Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.

Authors:  Pierre Aller; Allen M Orville
Journal:  Methods Mol Biol       Date:  2021

4.  Histidine-Lysine Axial Ligand Switching in a Hemoglobin: A Role for Heme Propionates.

Authors:  Dillon B Nye; Matthew R Preimesberger; Ananya Majumdar; Juliette T J Lecomte
Journal:  Biochemistry       Date:  2018-01-10       Impact factor: 3.162

5.  Transferring the entatic-state principle to copper photochemistry.

Authors:  B Dicke; A Hoffmann; J Stanek; M S Rampp; B Grimm-Lebsanft; F Biebl; D Rukser; B Maerz; D Göries; M Naumova; M Biednov; G Neuber; A Wetzel; S M Hofmann; P Roedig; A Meents; J Bielecki; J Andreasson; K R Beyerlein; H N Chapman; C Bressler; W Zinth; M Rübhausen; S Herres-Pawlis
Journal:  Nat Chem       Date:  2018-01-15       Impact factor: 24.427

6.  Sizing up a supercharged ferryl.

Authors:  Kyle M Lancaster
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-16       Impact factor: 11.205

Review 7.  Relating the multi-functionality of cytochrome c to membrane binding and structural conversion.

Authors:  Reinhard Schweitzer-Stenner
Journal:  Biophys Rev       Date:  2018-03-24

8.  Replacement of the heme axial lysine as a test of conformational adaptability in the truncated hemoglobin THB1.

Authors:  Dillon B Nye; Eric A Johnson; Melissa H Mai; Juliette T J Lecomte
Journal:  J Inorg Biochem       Date:  2019-09-04       Impact factor: 4.155

9.  XANES and EXAFS of dilute solutions of transition metals at XFELs.

Authors:  Ruchira Chatterjee; Clemens Weninger; Anton Loukianov; Sheraz Gul; Franklin D Fuller; Mun Hon Cheah; Thomas Fransson; Cindy C Pham; Silke Nelson; Sanghoon Song; Alexander Britz; Johannes Messinger; Uwe Bergmann; Roberto Alonso-Mori; Vittal K Yachandra; Jan Kern; Junko Yano
Journal:  J Synchrotron Radiat       Date:  2019-08-07       Impact factor: 2.616

10.  S-Adenosyl-l-ethionine is a Catalytically Competent Analog of S-Adenosyl-l-methione (SAM) in the Radical SAM Enzyme HydG.

Authors:  Stella Impano; Hao Yang; Eric M Shepard; Ryan Swimley; Adrien Pagnier; William E Broderick; Brian M Hoffman; Joan B Broderick
Journal:  Angew Chem Int Ed Engl       Date:  2020-12-01       Impact factor: 15.336

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