| Literature DB >> 28638769 |
Christina M Bock1, Gangajji Parameshwarappa1, Simon Bönisch2, Walter Bauer1, Corina Hutterer3, Maria Leidenberger4, Oliver Friedrich4, Manfred Marschall3, Barbara Kappes4, Andreas Görling2, Svetlana B Tsogoeva1.
Abstract
The straightforward and efficient synthesis of complex aza- and carbobicyclic compounds, which are of importance for medicinal chemistry, is a challenge for modern chemical methodology. An unprecedented metal-free six-step domino reaction of aldehydes with malononitrile was presented in our previous study to provide, in a single operation, these bicyclic nitrogen-containing molecules. Presented here is a deeper investigation of this atom-economical domino process by extending the scope of aldehydes, performing post-modifications of domino products, applying bifunctional organocatalysts and comprehensive NMR studies of selected domino products. The thermodynamic aspects of the overall reaction are also demonstrated using DFT methods in conjunction with a semi-empirical treatment of van der Waals interactions. Furthermore, biological studies of seven highly functionalized and artemisinin-containing domino products against human cytomegalovirus (HCMV) and Plasmodium falciparum 3D7 are presented. Remarkably, in vitro tests against HCMV revealed five domino products to be highly active compounds (EC50 0.071-1.8 μm), outperforming the clinical reference drug ganciclovir (EC50 2.6 μm). Against P. falciparum 3D7, three of the investigated artemisinin-derived domino products (EC50 0.72-1.8 nm) were more potent than the clinical drug chloroquine (EC50 9.1 nm).Entities:
Keywords: antimalarial agents; antiviral agents; density functional calculations; domino reactions; organocatalysis
Year: 2017 PMID: 28638769 PMCID: PMC5474667 DOI: 10.1002/open.201700005
Source DB: PubMed Journal: ChemistryOpen ISSN: 2191-1363 Impact factor: 2.911
Figure 1Selected examples of bioactive azabicyclic (A and B) and carbobicyclic compounds with exocyclic imine groups (C).
Extended substrate scope of the imidazole‐catalyzed multi‐step domino reaction.
| Entry | Aldehyde | Products | Yield [%][c] | d.r. | Ratio |
|---|---|---|---|---|---|
| 1[a] |
|
| – | – | – |
| 2[b] |
|
| 25 | 38:62 | 11:1 |
| 3 |
|
| 23 | 40:60 | 2:1 |
| 4 |
|
| 13 | 47:53 | 1:1 |
| 5 |
|
| 25 | >99:1 | 1:3 |
[a] “–”: 0 % yield. [b] The reaction has been previously reported.10 [c] Sum of yields of isolated products a and b. [d] Determined by 1H NMR spectroscopy (see the Supporting Information).
Scheme 1Imidazole‐catalyzed five‐step domino reaction of acetaldehyde (1) with malononitrile.
Catalyst and solvent screening for the reaction of phenylacetaldehyde (7) with malononitrile.
| Entry | Catalyst | Solvent | Time [h] | Yield [%][a] | Ratio | d.r. | d.r. |
|---|---|---|---|---|---|---|---|
| 1 |
| toluene | 48 | 52 | 4:1 | >99:1 | 50:50 |
| 2 |
| toluene | 24 | 52 | 1:11 | >99:1 | 33:67 |
| 3 |
| toluene | 26 | 70 | 1:22 | >99:1 | 50:50 |
| 4 |
| toluene | 25 | 83 | 1:25 | >99:1 | 25:75[d] |
| 5[e] | without catalyst | toluene | 22 | – | – | – | – |
| 6 |
| CH2Cl2 | 24 | 79 | 1:19 | >99:1 | 33:67 |
| 7 |
| hexane | 72 | 53 | 2:1 | >99:1 | 50:50 |
| 8 |
| C6F6 | 24 | 69 | 1:2 | >99:1 | 33:67 |
| 9 |
| MeOH | 23 | 50 | 1:7 | >99:1 | 50:50 |
[a] Sum of yields of isolated products 7 a and 7 b. [b] 7 a/7 b ratio determined by HPLC. [c] HPLC conditions for the separation of enantiomers and determination of ee values of obtained products were not found. [d] Enantioselectivities of the major product 7 b (48 % and 47 % ee for two diastereomers, respectively) were determined by 1H NMR spectroscopy in presence of the chiral shift reagent Eu(hfc)3. [e] “–”: 0 % yield.
Figure 2Left: Modified version of the mechanism reported in our previous publication.10 Right: Free energies [kcal mol−1] of the most stable conformers of the intermediates leading to 7 a and 7 b, respectively, relative to the reactants (D plus malononitrile), with (black) and without (gray) dispersion interactions taken into account in the geometry optimization and calculation of free energies.
Figure 3Left: Zoomed 13C NMR spectra (125 MHz) of syn‐2 a at +25 °C, showing the four CN signals. Numbering is as suggested by the NMRPredict software.13 a) Spectrum in [D6]DMSO; note the coalescence of the C‐16 and C‐17 signals; b) spectrum in [D6]DMSO/CD3CN (1:2); note the slow exchange rates of C‐16 and C‐17; c) the EXSY spectrum; the cross peaks indicate the chemical exchange of positions 16 and 17; mixing time 2.5 s, measuring time 7.7 h. Right: Two mesomeric structures of syn‐2 a. In pure [D6]DMSO, structure VI is more preferred over structure V than in a mixture of [D6]DMSO/CD3CN (1:2).
Predicted and experimental 13C NMR chemical shifts for syn‐2 a.
| C atom | NMRPredict [ppm] | Experiment [ppm] |
|---|---|---|
| 1 | 44.5 | 46.4 |
| 2 | 54.3 | 52.8 |
| 3 | 148.1 | 154.7 |
| 4 | 41.1 | 37.1 |
| 5 | 53.8 | 56.8 |
| 6 | 79.1 | 75.7 |
| 7 | 152.7 | 160.7 |
| 9 | 58.2 | 48.8 |
| 10 | 16.5 | 14.3 |
| 11 | 20.6 | 21.4 |
| 12 | 13.3 | 13.8 |
| 13 | 112.0 | 116.0 |
| 16 | 115.3 | 115.0[a] |
| 17 | 115.3 | 113.6[a] |
| 20 | 118.5 | 113.8 |
[a] Assignment may be reversed.
Scheme 2Post‐modifications of domino products 7 a and 7 b.
Figure 4The domino products evaluated against human cytomegalovirus (HCMV) and the parasite P. falciparum 3D7 in this work.
EC50 values of anti‐HCMV activity (AD169‐GFP) displayed in virus‐infected HFFs: ganciclovir, artemisinin and compounds 7 a, 7 b, 11, 12 a, 12 b, 13 a and 13 b.
| Compound | Molecular weight [Da] | EC50 [μ |
|---|---|---|
| Ganciclovir[b] | 255.23 | 2.6±0.50 |
| Artemisinin[b] | 282.34 | >10 |
|
| 402.46 | >10 |
|
| 402.46 | 1.84±0.15 |
|
| 768.87 | >10 |
|
| 967.13 | 0.07±0.00 |
|
| 967.13 | 0.26±0.01 |
|
| 814.94 | 0.21±0.00 |
|
| 814.94 | 0.22±0.00 |
[a] Mean values ± SD were calculated from replicates, n=4 (all data sets were confirmed by performing two independent experiments). [b] EC50 values have been previously reported.19 [c] EC50 values have been previously reported.10
EC50 values for chloroquine, dihydroartemisinin and compounds 7 a, 7 b, 11, 12 a, 12 b, 13 a and 13 b tested against the parasite P. falciparum 3D7.
| Compound | Molecular weight [Da] | EC50 [n |
|---|---|---|
| Chloroquine | 319.87 | 9.1±1.0 |
| Dihydroartemisinin | 284.35 | 2.3±0.4 |
|
| 402.46 | >1 μ |
|
| 402.46 | >1 μ |
|
| 768.87 | 1.8±0.6 |
|
| 967.13 | 17.0±3.0 |
|
| 967.13 | 63.0±25.0 |
|
| 814.94 | 1.5±0.3 |
|
| 814.94 | 0.72±0.2 |
[a] Mean values ± SD were calculated from at least three independent biological replicates (n≥3) and each of these data sets consisted of three separate measurements (see the Experimental Section).