| Literature DB >> 28594918 |
Robert Carreras-Torres1, Mattias Johansson1, Philip C Haycock2, Kaitlin H Wade2, Caroline L Relton2, Richard M Martin2,3, George Davey Smith2, Demetrius Albanes4, Melinda C Aldrich5, Angeline Andrew6, Susanne M Arnold7, Heike Bickeböller8, Stig E Bojesen9, Hans Brunnström10, Jonas Manjer10, Irene Brüske11, Neil E Caporaso12, Chu Chen13, David C Christiani14, W Jay Christian15, Jennifer A Doherty16, Eric J Duell17, John K Field18, Michael P A Davies18, Michael W Marcus18, Gary E Goodman19, Kjell Grankvist20, Aage Haugen21, Yun-Chul Hong22, Lambertus A Kiemeney23, Erik H F M van der Heijden23, Peter Kraft24, Mikael B Johansson20, Stephen Lam25, Maria Teresa Landi12, Philip Lazarus26, Loïc Le Marchand27, Geoffrey Liu28, Olle Melander29,30, Sungshim L Park31, Gad Rennert32, Angela Risch33, Eric B Haura34, Ghislaine Scelo1, David Zaridze35, Anush Mukeriya35, Milan Savić36, Jolanta Lissowska37, Beata Swiatkowska38, Vladimir Janout39, Ivana Holcatova40, Dana Mates41, Matthew B Schabath42, Hongbing Shen43, Adonina Tardon44, M Dawn Teare45, Penella Woll45, Ming-Sound Tsao46, Xifeng Wu47, Jian-Min Yuan48, Rayjean J Hung49, Christopher I Amos50, James McKay1, Paul Brennan1.
Abstract
BACKGROUND: Assessing the relationship between lung cancer and metabolic conditions is challenging because of the confounding effect of tobacco. Mendelian randomization (MR), or the use of genetic instrumental variables to assess causality, may help to identify the metabolic drivers of lung cancer. METHODS ANDEntities:
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Year: 2017 PMID: 28594918 PMCID: PMC5464539 DOI: 10.1371/journal.pone.0177875
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Number of identified instrumental SNPs for metabolic factors, phenotype distribution in the discovery sample, and proportion of phenotype variance explained by the instruments.
SD: standard deviation.
| Phenotype | N SNP | Mean ± SD | Units | Variance explained (%) | Consortium | Publication for instruments |
|---|---|---|---|---|---|---|
| Body mass index | 73 | 27.0 ± 4.6 | kg/m2 | 2.7 | GIANT | Locke et al 2015 [ |
| Waist to hip ratio | 32 | 1.1 ± 0.1 | cm/cm | 1.4 | GIANT | Shungin et al 2015 [ |
| High density cholesterol | 63 | 53.3 ± 15.5 | mg/dl | 13.7 | GLGC | Willer et al 2013 [ |
| Low density cholesterol | 50 | 133.6 ± 38.0 | mg/dl | 14.6 | GLGC | Willer et al 2013 [ |
| Total cholesterol | 67 | 213.28 ± 42.6 | mg/dl | 15.0 | GLGC | Willer et al 2013 [ |
| Triglycerides | 39 | 140.85 ± 87.8 | mg/dl | 11.7 | GLGC | Willer et al 2013 [ |
| HDL rare variants | 11 | 1.4 ± 0.4 | mmol/l | 4.1 | - | Helgadottir et al 2016 [ |
| Non-HDL rare variants | 11 | 4.0 ± 1.2 | mmol/l | 4.1 | - | Helgadottir et al 2016 [ |
| Triglycerides rare variants | 7 | 1.3 ± (0.8–2.2) | mmol/l | 2.4 | - | Helgadottir et al 2016 [ |
| Fasting glucose | 25 | 5.2 ± 0.8 | mmol/l | 4.8 | MAGIC | Scott et al 2012 [ |
| Fasting insulin | 11 | 56.9 ± 44.4 | pmol/l | 1.2 | MAGIC | Scott et al 2012 [ |
| 2h post-challenge glucose | 6 | 5.6 ± 1.7 | mmol/l | 1.7 | MAGIC | Scott et al 2012 [ |
Fig 1Forest plot of lung cancer overall risk for one standard deviation (Table 1) increase in each phenotype provided by the MR likelihood-based approach.
CI: Confidence interval. P: P value.
Fig 2Forest plot of lung cancer risk for each SD increase in BMI (approximately 4.6 kg/m2) observed in the likelihood-based MR approach.
95%CI: 95% Confidence Interval; P: P value. I2: between-strata heterogeneity. PHet: P value of between-strata heterogeneity.
Fig 3Funnel plots for the distribution of risk estimates of BMI instrumental SNPs along with MR causal effect lung cancer subtypes.
OR: Odds ratio; Int: Intercept; P: P value.
Fig 4Forest plot of lung cancer risk for each SD increase in LDL (approximately 38.0 mg/dl) observed in the likelihood-based MR approach using the instrument set of common SNPs.
95%CI: 95% Confidence Interval; P: P value. I2: between-strata heterogeneity. PHet: P value of between-strata heterogeneity.
Fig 5Forest plot of lung cancer risk for each SD increase in fasting insulin (approximately 44.4 pmol/L) observed in the likelihood-based MR approach.
95%CI: 95% Confidence Interval; P: P value. I2: between-strata heterogeneity. PHet: P value of between-strata heterogeneity.