Literature DB >> 28567967

Evaluation of genetic variants in association with colorectal cancer risk and survival in Asians.

Nan Wang1,2, Yingchang Lu1, Nikhil K Khankari1, Jirong Long1, Hong-Lan Li3, Jing Gao3, Yu-Tang Gao3, Yong-Bing Xiang3, Xiao-Ou Shu1, Wei Zheng1.   

Abstract

Genome-wide association studies (GWAS) have identified over 40 genetic loci associated with colorectal cancer (CRC) risk. The association of single nucleotide polymorphisms (SNPs) at these loci with CRC risk and survival has not been adequately evaluated in East Asians. GWAS-identified CRC risk variants were used to construct weighted genetic risk scores (GRSs). We evaluated these GRSs in association with CRC risk in 3,303 CRC cases and 3,553 controls using logistic regression models. Associations with overall and CRC-specific survival were assessed in 731 CRC patients using Cox regression models. The association between the GRSs (overall and Asian-specific) and CRC risk was approximately twofold (highest vs. lowest quintile), and the shape of the dose-response was linear (ptrend  = 1.24 × 10-13 and 3.02 × 10-14 for overall GRS and Asian-specific GRS, respectively). The association of the GRS with CRC risk was stronger among those with a family history of CRC (pinteraction  = 0.007). Asian-specific GRS using previously reported survival SNPs increased risk for mortality and the shape of the dose-response was linear for CRC-specific and all-cause mortality (ptrend  = 0.01 and 0.006, respectively). Furthermore, the minor alleles of rs6983267 and rs1957636 were associated with worse CRC-specific and overall survival. We show that GRSs constructed using GWAS-identified common variants are strongly associated with CRC risk in Asians. We confirm previous findings for the possible association between some SNPs with survival, and provide evidence for two additional CRC risk variants that may be related to CRC survival.
© 2017 UICC.

Entities:  

Keywords:  GWAS; colorectal cancer; genetics; review; single nucleotide polymorphism; survival

Mesh:

Year:  2017        PMID: 28567967      PMCID: PMC5524202          DOI: 10.1002/ijc.30812

Source DB:  PubMed          Journal:  Int J Cancer        ISSN: 0020-7136            Impact factor:   7.396


  41 in total

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2.  A model to determine colorectal cancer risk using common genetic susceptibility loci.

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Journal:  Gastroenterology       Date:  2015-02-13       Impact factor: 22.682

3.  Cohort Profile: The Shanghai Men's Health Study.

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4.  GWAS-identified colorectal cancer susceptibility locus associates with disease prognosis.

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5.  The Shanghai Women's Health Study: rationale, study design, and baseline characteristics.

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6.  Common genetic variants at the CRAC1 (HMPS) locus on chromosome 15q13.3 influence colorectal cancer risk.

Authors:  Emma Jaeger; Emily Webb; Kimberley Howarth; Luis Carvajal-Carmona; Andrew Rowan; Peter Broderick; Axel Walther; Sarah Spain; Alan Pittman; Zoe Kemp; Kate Sullivan; Karl Heinimann; Steven Lubbe; Enric Domingo; Ella Barclay; Lynn Martin; Maggie Gorman; Ian Chandler; Jayaram Vijayakrishnan; Wendy Wood; Elli Papaemmanuil; Steven Penegar; Mobshra Qureshi; Susan Farrington; Albert Tenesa; Jean-Baptiste Cazier; David Kerr; Richard Gray; Julian Peto; Malcolm Dunlop; Harry Campbell; Huw Thomas; Richard Houlston; Ian Tomlinson
Journal:  Nat Genet       Date:  2007-12-16       Impact factor: 38.330

7.  Analyses of 7,635 Patients with Colorectal Cancer Using Independent Training and Validation Cohorts Show That rs9929218 in CDH1 Is a Prognostic Marker of Survival.

Authors:  Christopher G Smith; David Fisher; Rebecca Harris; Timothy S Maughan; Amanda I Phipps; Susan Richman; Matthew Seymour; Ian Tomlinson; Dan Rosmarin; David Kerr; Andrew T Chan; Ulrike Peters; Polly A Newcomb; Shelley Idziaszczyk; Hannah West; Angela Meade; Richard Kaplan; Jeremy P Cheadle
Journal:  Clin Cancer Res       Date:  2015-04-14       Impact factor: 12.531

8.  Multiple common susceptibility variants near BMP pathway loci GREM1, BMP4, and BMP2 explain part of the missing heritability of colorectal cancer.

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Journal:  PLoS Genet       Date:  2011-06-02       Impact factor: 5.917

9.  A novel colorectal cancer risk locus at 4q32.2 identified from an international genome-wide association study.

Authors:  Stephanie L Schmit; Fredrick R Schumacher; Christopher K Edlund; David V Conti; Leon Raskin; Flavio Lejbkowicz; Mila Pinchev; Hedy S Rennert; Mark A Jenkins; John L Hopper; Daniel D Buchanan; Noralane M Lindor; Loic Le Marchand; Steven Gallinger; Robert W Haile; Polly A Newcomb; Shu-Chen Huang; Gad Rennert; Graham Casey; Stephen B Gruber
Journal:  Carcinogenesis       Date:  2014-07-14       Impact factor: 4.741

10.  Trans-ethnic genome-wide association study of colorectal cancer identifies a new susceptibility locus in VTI1A.

Authors:  Hansong Wang; Terrilea Burnett; Suminori Kono; Christopher A Haiman; Motoki Iwasaki; Lynne R Wilkens; Lenora W M Loo; David Van Den Berg; Laurence N Kolonel; Brian E Henderson; Temitope O Keku; Robert S Sandler; Lisa B Signorello; William J Blot; Polly A Newcomb; Mala Pande; Christopher I Amos; Dee W West; Stéphane Bézieau; Sonja I Berndt; Brent W Zanke; Li Hsu; Noralane M Lindor; Robert W Haile; John L Hopper; Mark A Jenkins; Steven Gallinger; Graham Casey; Stephanie L Stenzel; Fredrick R Schumacher; Ulrike Peters; Stephen B Gruber; Shoichiro Tsugane; Daniel O Stram; Loïc Le Marchand
Journal:  Nat Commun       Date:  2014-08-08       Impact factor: 14.919

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1.  Large-Scale Genome-Wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.

Authors:  Yingchang Lu; Sun-Seog Kweon; Chizu Tanikawa; Wei-Hua Jia; Yong-Bing Xiang; Qiuyin Cai; Chenjie Zeng; Stephanie L Schmit; Aesun Shin; Keitaro Matsuo; Sun Ha Jee; Dong-Hyun Kim; Jeongseon Kim; Wanqing Wen; Jiajun Shi; Xingyi Guo; Bingshan Li; Nan Wang; Ben Zhang; Xinxiang Li; Min-Ho Shin; Hong-Lan Li; Zefang Ren; Jae Hwan Oh; Isao Oze; Yoon-Ok Ahn; Keum Ji Jung; David V Conti; Fredrick R Schumacher; Gad Rennert; Mark A Jenkins; Peter T Campbell; Michael Hoffmeister; Graham Casey; Stephen B Gruber; Jing Gao; Yu-Tang Gao; Zhi-Zhong Pan; Yoichiro Kamatani; Yi-Xin Zeng; Xiao-Ou Shu; Jirong Long; Koichi Matsuda; Wei Zheng
Journal:  Gastroenterology       Date:  2018-12-06       Impact factor: 22.682

2.  Evaluating the Utility of Polygenic Risk Scores in Identifying High-Risk Individuals for Eight Common Cancers.

Authors:  Guochong Jia; Yingchang Lu; Wanqing Wen; Jirong Long; Ying Liu; Ran Tao; Bingshan Li; Joshua C Denny; Xiao-Ou Shu; Wei Zheng
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4.  A Negative Feedback Loop Between NAMPT and TGF-β Signaling Pathway in Colorectal Cancer Cells.

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7.  LINC01287 facilitates proliferation, migration, invasion and EMT of colon cancer cells via miR-4500/MAP3K13 pathway.

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8.  Genome-wide scan of the effect of common nsSNPs on colorectal cancer survival outcome.

Authors:  Evropi Theodoratou; Susan M Farrington; Maria Timofeeva; Farhat Vn Din; Victoria Svinti; Albert Tenesa; Tao Liu; Annika Lindblom; Steven Gallinger; Harry Campbell; Malcolm G Dunlop
Journal:  Br J Cancer       Date:  2018-08-21       Impact factor: 7.640

  8 in total

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