Literature DB >> 25683114

A model to determine colorectal cancer risk using common genetic susceptibility loci.

Li Hsu1, Jihyoun Jeon2, Hermann Brenner3, Stephen B Gruber4, Robert E Schoen5, Sonja I Berndt6, Andrew T Chan7, Jenny Chang-Claude8, Mengmeng Du2, Jian Gong2, Tabitha A Harrison2, Richard B Hayes9, Michael Hoffmeister10, Carolyn M Hutter11, Yi Lin2, Reiko Nishihara12, Shuji Ogino13, Ross L Prentice2, Fredrick R Schumacher14, Daniela Seminara11, Martha L Slattery15, Duncan C Thomas14, Mark Thornquist2, Polly A Newcomb2, John D Potter16, Yingye Zheng2, Emily White2, Ulrike Peters17.   

Abstract

BACKGROUND & AIMS: Risk for colorectal cancer (CRC) can be greatly reduced through screening. To aid in the development of screening strategies, we refined models designed to determine risk of CRC by incorporating information from common genetic susceptibility loci.
METHODS: By using data collected from more than 12,000 participants in 6 studies performed from 1990 through 2011 in the United States and Germany, we developed risk determination models based on sex, age, family history, genetic risk score (number of risk alleles carried at 27 validated common CRC susceptibility loci), and history of endoscopic examinations. The model was validated using data collected from approximately 1800 participants in the Prostate, Lung, Colorectal, and Ovarian Cancer Screening Trial, conducted from 1993 through 2001 in the United States.
RESULTS: We identified a CRC genetic risk score that independently predicted which patients in the training set would develop CRC. Compared with determination of risk based only on family history, adding the genetic risk score increased the discriminatory accuracy from 0.51 to 0.59 (P = .0028) for men and from 0.52 to 0.56 (P = .14) for women. We calculated age- and sex-specific 10-year CRC absolute risk estimates based on the number of risk alleles, family history, and history of endoscopic examinations. A model that included a genetic risk score better determined the recommended starting age for screening in subjects with and without family histories of CRC. The starting age for high-risk men (family history of CRC and genetic risk score, 90%) was 42 years, and for low-risk men (no family history of CRC and genetic risk score, 10%) was 52 years. For men with no family history and a high genetic risk score (90%), the starting age would be 47 years; this is an intermediate value that is 5 years earlier than it would be for men with a genetic risk score of 10%. Similar trends were observed in women.
CONCLUSIONS: By incorporating information on CRC risk alleles, we created a model to determine the risk for CRC more accurately. This model might be used to develop screening and prevention strategies.
Copyright © 2015 AGA Institute. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Colorectal Cancer Screening; Genome-Wide Association Study; Risk Determination; Risk Stratification

Mesh:

Substances:

Year:  2015        PMID: 25683114      PMCID: PMC4446193          DOI: 10.1053/j.gastro.2015.02.010

Source DB:  PubMed          Journal:  Gastroenterology        ISSN: 0016-5085            Impact factor:   22.682


  39 in total

1.  Long-term efficacy of sigmoidoscopy in the reduction of colorectal cancer incidence.

Authors:  Polly A Newcomb; Barry E Storer; Libby M Morimoto; Allyson Templeton; John D Potter
Journal:  J Natl Cancer Inst       Date:  2003-04-16       Impact factor: 13.506

Review 2.  Risk prediction models for colorectal cancer: a review.

Authors:  Aung Ko Win; Robert J Macinnis; John L Hopper; Mark A Jenkins
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2011-12-14       Impact factor: 4.254

3.  Colorectal cancer epidemiology: incidence, mortality, survival, and risk factors.

Authors:  Fatima A Haggar; Robin P Boushey
Journal:  Clin Colon Rectal Surg       Date:  2009-11

4.  Large sample size, wide variant spectrum, and advanced machine-learning technique boost risk prediction for inflammatory bowel disease.

Authors:  Zhi Wei; Wei Wang; Jonathan Bradfield; Jin Li; Christopher Cardinale; Edward Frackelton; Cecilia Kim; Frank Mentch; Kristel Van Steen; Peter M Visscher; Robert N Baldassano; Hakon Hakonarson
Journal:  Am J Hum Genet       Date:  2013-05-23       Impact factor: 11.025

5.  Characterization of gene-environment interactions for colorectal cancer susceptibility loci.

Authors:  Carolyn M Hutter; Jenny Chang-Claude; Martha L Slattery; Bethann M Pflugeisen; Yi Lin; David Duggan; Hongmei Nan; Mathieu Lemire; Jagadish Rangrej; Jane C Figueiredo; Shuo Jiao; Tabitha A Harrison; Yan Liu; Lin S Chen; Deanna L Stelling; Greg S Warnick; Michael Hoffmeister; Sébastien Küry; Charles S Fuchs; Edward Giovannucci; Aditi Hazra; Peter Kraft; David J Hunter; Steven Gallinger; Brent W Zanke; Hermann Brenner; Bernd Frank; Jing Ma; Cornelia M Ulrich; Emily White; Polly A Newcomb; Charles Kooperberg; Andrea Z LaCroix; Ross L Prentice; Rebecca D Jackson; Robert E Schoen; Stephen J Chanock; Sonja I Berndt; Richard B Hayes; Bette J Caan; John D Potter; Li Hsu; Stéphane Bézieau; Andrew T Chan; Thomas J Hudson; Ulrike Peters
Journal:  Cancer Res       Date:  2012-02-24       Impact factor: 12.701

6.  Risk prediction using genome-wide association studies.

Authors:  Charles Kooperberg; Michael LeBlanc; Valerie Obenchain
Journal:  Genet Epidemiol       Date:  2010-11       Impact factor: 2.135

7.  Correcting "winner's curse" in odds ratios from genomewide association findings for major complex human diseases.

Authors:  Hua Zhong; Ross L Prentice
Journal:  Genet Epidemiol       Date:  2010-01       Impact factor: 2.135

8.  A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33.

Authors:  Gloria M Petersen; Laufey Amundadottir; Charles S Fuchs; Peter Kraft; Rachael Z Stolzenberg-Solomon; Kevin B Jacobs; Alan A Arslan; H Bas Bueno-de-Mesquita; Steven Gallinger; Myron Gross; Kathy Helzlsouer; Elizabeth A Holly; Eric J Jacobs; Alison P Klein; Andrea LaCroix; Donghui Li; Margaret T Mandelson; Sara H Olson; Harvey A Risch; Wei Zheng; Demetrius Albanes; William R Bamlet; Christine D Berg; Marie-Christine Boutron-Ruault; Julie E Buring; Paige M Bracci; Federico Canzian; Sandra Clipp; Michelle Cotterchio; Mariza de Andrade; Eric J Duell; J Michael Gaziano; Edward L Giovannucci; Michael Goggins; Göran Hallmans; Susan E Hankinson; Manal Hassan; Barbara Howard; David J Hunter; Amy Hutchinson; Mazda Jenab; Rudolf Kaaks; Charles Kooperberg; Vittorio Krogh; Robert C Kurtz; Shannon M Lynch; Robert R McWilliams; Julie B Mendelsohn; Dominique S Michaud; Hemang Parikh; Alpa V Patel; Petra H M Peeters; Aleksandar Rajkovic; Elio Riboli; Laudina Rodriguez; Daniela Seminara; Xiao-Ou Shu; Gilles Thomas; Anne Tjønneland; Geoffrey S Tobias; Dimitrios Trichopoulos; Stephen K Van Den Eeden; Jarmo Virtamo; Jean Wactawski-Wende; Zhaoming Wang; Brian M Wolpin; Herbert Yu; Kai Yu; Anne Zeleniuch-Jacquotte; Joseph F Fraumeni; Robert N Hoover; Patricia Hartge; Stephen J Chanock
Journal:  Nat Genet       Date:  2010-01-24       Impact factor: 38.330

9.  Cumulative impact of common genetic variants and other risk factors on colorectal cancer risk in 42,103 individuals.

Authors:  Malcolm G Dunlop; Albert Tenesa; Susan M Farrington; Stephane Ballereau; David H Brewster; Thibaud Koessler; Paul Pharoah; Clemens Schafmayer; Jochen Hampe; Henry Völzke; Jenny Chang-Claude; Michael Hoffmeister; Hermann Brenner; Susanna von Holst; Simone Picelli; Annika Lindblom; Mark A Jenkins; John L Hopper; Graham Casey; David Duggan; Polly A Newcomb; Anna Abulí; Xavier Bessa; Clara Ruiz-Ponte; Sergi Castellví-Bel; Iina Niittymäki; Sari Tuupanen; Auli Karhu; Lauri Aaltonen; Brent Zanke; Tom Hudson; Steven Gallinger; Ella Barclay; Lynn Martin; Maggie Gorman; Luis Carvajal-Carmona; Axel Walther; David Kerr; Steven Lubbe; Peter Broderick; Ian Chandler; Alan Pittman; Steven Penegar; Harry Campbell; Ian Tomlinson; Richard S Houlston
Journal:  Gut       Date:  2012-04-05       Impact factor: 23.059

10.  Multiple common susceptibility variants near BMP pathway loci GREM1, BMP4, and BMP2 explain part of the missing heritability of colorectal cancer.

Authors:  Ian P M Tomlinson; Luis G Carvajal-Carmona; Sara E Dobbins; Albert Tenesa; Angela M Jones; Kimberley Howarth; Claire Palles; Peter Broderick; Emma E M Jaeger; Susan Farrington; Annabelle Lewis; James G D Prendergast; Alan M Pittman; Evropi Theodoratou; Bianca Olver; Marion Walker; Steven Penegar; Ella Barclay; Nicola Whiffin; Lynn Martin; Stephane Ballereau; Amy Lloyd; Maggie Gorman; Steven Lubbe; Bryan Howie; Jonathan Marchini; Clara Ruiz-Ponte; Ceres Fernandez-Rozadilla; Antoni Castells; Angel Carracedo; Sergi Castellvi-Bel; David Duggan; David Conti; Jean-Baptiste Cazier; Harry Campbell; Oliver Sieber; Lara Lipton; Peter Gibbs; Nicholas G Martin; Grant W Montgomery; Joanne Young; Paul N Baird; Steven Gallinger; Polly Newcomb; John Hopper; Mark A Jenkins; Lauri A Aaltonen; David J Kerr; Jeremy Cheadle; Paul Pharoah; Graham Casey; Richard S Houlston; Malcolm G Dunlop
Journal:  PLoS Genet       Date:  2011-06-02       Impact factor: 5.917

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  58 in total

1.  External Validation of Risk Prediction Models Incorporating Common Genetic Variants for Incident Colorectal Cancer Using UK Biobank.

Authors:  Catherine L Saunders; Britt Kilian; Deborah J Thompson; Luke J McGeoch; Simon J Griffin; Antonis C Antoniou; Jon D Emery; Fiona M Walter; Joe Dennis; Xin Yang; Juliet A Usher-Smith
Journal:  Cancer Prev Res (Phila)       Date:  2020-02-18

Review 2.  Colorectal Cancer in Young Adults.

Authors:  Anand Venugopal; Elena M Stoffel
Journal:  Curr Treat Options Gastroenterol       Date:  2019-03

3.  Risk Prediction Models for Colorectal Cancer Incorporating Common Genetic Variants: A Systematic Review.

Authors:  Luke McGeoch; Catherine L Saunders; Simon J Griffin; Jon D Emery; Fiona M Walter; Deborah J Thompson; Antonis C Antoniou; Juliet A Usher-Smith
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2019-07-10       Impact factor: 4.254

4.  Establishing a valid approach for estimating familial risk of cancer explained by common genetic variants.

Authors:  Korbinian Weigl; Jenny Chang-Claude; Li Hsu; Michael Hoffmeister; Hermann Brenner
Journal:  Int J Cancer       Date:  2019-10-16       Impact factor: 7.396

5.  A Mixed-Effects Model for Powerful Association Tests in Integrative Functional Genomics.

Authors:  Yu-Ru Su; Chongzhi Di; Stephanie Bien; Licai Huang; Xinyuan Dong; Goncalo Abecasis; Sonja Berndt; Stephane Bezieau; Hermann Brenner; Bette Caan; Graham Casey; Jenny Chang-Claude; Stephen Chanock; Sai Chen; Charles Connolly; Keith Curtis; Jane Figueiredo; Manish Gala; Steven Gallinger; Tabitha Harrison; Michael Hoffmeister; John Hopper; Jeroen R Huyghe; Mark Jenkins; Amit Joshi; Loic Le Marchand; Polly Newcomb; Deborah Nickerson; John Potter; Robert Schoen; Martha Slattery; Emily White; Brent Zanke; Ulrike Peters; Li Hsu
Journal:  Am J Hum Genet       Date:  2018-05-03       Impact factor: 11.025

6.  Genetic Risk Score Is Associated With Prevalence of Advanced Neoplasms in a Colorectal Cancer Screening Population.

Authors:  Korbinian Weigl; Hauke Thomsen; Yesilda Balavarca; Jacklyn N Hellwege; Martha J Shrubsole; Hermann Brenner
Journal:  Gastroenterology       Date:  2018-03-21       Impact factor: 22.682

7.  Cost-Effectiveness of Personalized Screening for Colorectal Cancer Based on Polygenic Risk and Family History.

Authors:  Dayna R Cenin; Steffie K Naber; Anne C de Weerdt; Mark A Jenkins; David B Preen; Hooi C Ee; Peter C O'Leary; Iris Lansdorp-Vogelaar
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2019-11-20       Impact factor: 4.254

8.  Evaluation of genetic variants in association with colorectal cancer risk and survival in Asians.

Authors:  Nan Wang; Yingchang Lu; Nikhil K Khankari; Jirong Long; Hong-Lan Li; Jing Gao; Yu-Tang Gao; Yong-Bing Xiang; Xiao-Ou Shu; Wei Zheng
Journal:  Int J Cancer       Date:  2017-06-21       Impact factor: 7.396

Review 9.  Colorectal Cancer Epidemiology in the Nurses' Health Study.

Authors:  Dong Hoon Lee; NaNa Keum; Edward L Giovannucci
Journal:  Am J Public Health       Date:  2016-07-26       Impact factor: 9.308

10.  Combined Utility of 25 Disease and Risk Factor Polygenic Risk Scores for Stratifying Risk of All-Cause Mortality.

Authors:  Allison Meisner; Prosenjit Kundu; Yan Dora Zhang; Lauren V Lan; Sungwon Kim; Disha Ghandwani; Parichoy Pal Choudhury; Sonja I Berndt; Neal D Freedman; Montserrat Garcia-Closas; Nilanjan Chatterjee
Journal:  Am J Hum Genet       Date:  2020-08-05       Impact factor: 11.025

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