Literature DB >> 28532216

Structural Insights into the Eukaryotic Transcription Initiation Machinery.

Eva Nogales1,2,3, Robert K Louder4, Yuan He5.   

Abstract

Eukaryotic gene transcription requires the assembly at the promoter of a large preinitiation complex (PIC) that includes RNA polymerase II (Pol II) and the general transcription factors TFIID, TFIIA, TFIIB, TFIIF, TFIIE, and TFIIH. The size and complexity of Pol II, TFIID, and TFIIH have precluded their reconstitution from heterologous systems, and purification relies on scarce endogenous sources. Together with their conformational flexibility and the transient nature of their interactions, these limitations had precluded structural characterization of the PIC. In the last few years, however, progress in cryo-electron microscopy (cryo-EM) has made possible the visualization, at increasingly better resolution, of large PIC assemblies in different functional states. These structures can now be interpreted in near-atomic detail and provide an exciting structural framework for past and future functional studies, giving us unique mechanistic insight into the complex process of transcription initiation.

Entities:  

Keywords:  PIC; TFIID; TFIIE; TFIIF; TFIIH; cryo-EM; general transcription factors

Mesh:

Substances:

Year:  2017        PMID: 28532216      PMCID: PMC6186020          DOI: 10.1146/annurev-biophys-070816-033751

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  85 in total

1.  RNA polymerase II-associated proteins are required for a DNA conformation change in the transcription initiation complex.

Authors:  S Buratowski; M Sopta; J Greenblatt; P A Sharp
Journal:  Proc Natl Acad Sci U S A       Date:  1991-09-01       Impact factor: 11.205

Review 2.  General initiation factors for RNA polymerase II.

Authors:  R C Conaway; J W Conaway
Journal:  Annu Rev Biochem       Date:  1993       Impact factor: 23.643

3.  The architecture of human general transcription factor TFIID core complex.

Authors:  Christoph Bieniossek; Gabor Papai; Christiane Schaffitzel; Frederic Garzoni; Maxime Chaillet; Elisabeth Scheer; Petros Papadopoulos; Laszlo Tora; Patrick Schultz; Imre Berger
Journal:  Nature       Date:  2013-01-06       Impact factor: 49.962

4.  Structural organization of yeast and mammalian mediator complexes.

Authors:  M R Dotson; C X Yuan; R G Roeder; L C Myers; C M Gustafsson; Y W Jiang; Y Li; R D Kornberg; F J Asturias
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

5.  Human TFIID binds to core promoter DNA in a reorganized structural state.

Authors:  Michael A Cianfrocco; George A Kassavetis; Patricia Grob; Jie Fang; Tamar Juven-Gershon; James T Kadonaga; Eva Nogales
Journal:  Cell       Date:  2013-01-17       Impact factor: 41.582

6.  Architecture of the Human and Yeast General Transcription and DNA Repair Factor TFIIH.

Authors:  Jie Luo; Peter Cimermancic; Shruthi Viswanath; Christopher C Ebmeier; Bong Kim; Marine Dehecq; Vishnu Raman; Charles H Greenberg; Riccardo Pellarin; Andrej Sali; Dylan J Taatjes; Steven Hahn; Jeff Ranish
Journal:  Mol Cell       Date:  2015-09-03       Impact factor: 17.970

7.  Opening and closing of the bacterial RNA polymerase clamp.

Authors:  Anirban Chakraborty; Dongye Wang; Yon W Ebright; You Korlann; Ekaterine Kortkhonjia; Taiho Kim; Saikat Chowdhury; Sivaramesh Wigneshweraraj; Herbert Irschik; Rolf Jansen; B Tracy Nixon; Jennifer Knight; Shimon Weiss; Richard H Ebright
Journal:  Science       Date:  2012-08-03       Impact factor: 47.728

8.  Architecture of the RNA polymerase II preinitiation complex and mechanism of ATP-dependent promoter opening.

Authors:  Sebastian Grünberg; Linda Warfield; Steven Hahn
Journal:  Nat Struct Mol Biol       Date:  2012-07-01       Impact factor: 15.369

9.  Cytoplasmic TAF2-TAF8-TAF10 complex provides evidence for nuclear holo-TFIID assembly from preformed submodules.

Authors:  Simon Trowitzsch; Cristina Viola; Elisabeth Scheer; Sascha Conic; Virginie Chavant; Marjorie Fournier; Gabor Papai; Ima-Obong Ebong; Christiane Schaffitzel; Juan Zou; Matthias Haffke; Juri Rappsilber; Carol V Robinson; Patrick Schultz; Laszlo Tora; Imre Berger
Journal:  Nat Commun       Date:  2015-01-14       Impact factor: 14.919

10.  Structure of promoter-bound TFIID and model of human pre-initiation complex assembly.

Authors:  Robert K Louder; Yuan He; José Ramón López-Blanco; Jie Fang; Pablo Chacón; Eva Nogales
Journal:  Nature       Date:  2016-03-23       Impact factor: 49.962

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  33 in total

Review 1.  Introduction to the Thematic Minireview Series: Chromatin and transcription.

Authors:  Joel M Gottesfeld; Michael F Carey
Journal:  J Biol Chem       Date:  2018-08-01       Impact factor: 5.157

2.  Human T-Cell Lymphotropic Virus Type 1 Transactivator Tax Exploits the XPB Subunit of TFIIH during Viral Transcription.

Authors:  Christophe Martella; Armelle Inge Tollenaere; Laetitia Waast; Benoit Lacombe; Damien Groussaud; Florence Margottin-Goguet; Bertha Cecilia Ramirez; Claudine Pique
Journal:  J Virol       Date:  2020-03-31       Impact factor: 5.103

3.  Transcription with a laser: Radiation-damage-free diffraction of RNA Polymerase II crystals.

Authors:  Guowu Lin; Simon C Weiss; Sandra Vergara; Carlos Camacho; Guillermo Calero
Journal:  Methods       Date:  2019-04-25       Impact factor: 3.608

4.  The subunit assembly state of the Mediator complex is nutrient-regulated and is dysregulated in a genetic model of insulin resistance and obesity.

Authors:  Dou Yeon Youn; Alus M Xiaoli; Hyokjoon Kwon; Fajun Yang; Jeffrey E Pessin
Journal:  J Biol Chem       Date:  2019-04-26       Impact factor: 5.157

5.  RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription.

Authors:  Lingting Li; Vadim Molodtsov; Wei Lin; Richard H Ebright; Yu Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-03       Impact factor: 11.205

Review 6.  High-resolution cryo-EM structures of TFIIH and their functional implications.

Authors:  Eva Nogales; Basil J Greber
Journal:  Curr Opin Struct Biol       Date:  2019-10-07       Impact factor: 6.809

7.  Two roles for the yeast transcription coactivator SAGA and a set of genes redundantly regulated by TFIID and SAGA.

Authors:  Rafal Donczew; Linda Warfield; Derek Pacheco; Ariel Erijman; Steven Hahn
Journal:  Elife       Date:  2020-01-08       Impact factor: 8.140

8.  Structure of human RNA polymerase III.

Authors:  Ewan Phillip Ramsay; Guillermo Abascal-Palacios; Julia L Daiß; Helen King; Jerome Gouge; Michael Pilsl; Fabienne Beuron; Edward Morris; Philip Gunkel; Christoph Engel; Alessandro Vannini
Journal:  Nat Commun       Date:  2020-12-17       Impact factor: 14.919

9.  Structures of mammalian RNA polymerase II pre-initiation complexes.

Authors:  Shintaro Aibara; Sandra Schilbach; Patrick Cramer
Journal:  Nature       Date:  2021-04-26       Impact factor: 49.962

Review 10.  Envisioning how the prototypic molecular machine TFIIH functions in transcription initiation and DNA repair.

Authors:  Susan E Tsutakawa; Chi-Lin Tsai; Chunli Yan; Amer Bralić; Walter J Chazin; Samir M Hamdan; Orlando D Schärer; Ivaylo Ivanov; John A Tainer
Journal:  DNA Repair (Amst)       Date:  2020-09-17
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