Literature DB >> 30068547

Introduction to the Thematic Minireview Series: Chromatin and transcription.

Joel M Gottesfeld1, Michael F Carey2.   

Abstract

Regulation of transcription in eukaryotic cells is a dynamic interplay between chromatin structure and recruitment of a plethora of transcription factors to enhancers, upstream activator sequences, and proximal promoter elements. These factors serve to recruit RNA polymerase to the core promoter for productive transcription. In this Thematic Minireview Series on chromatin and transcription, five reviews summarize current knowledge of diverse aspects of transcriptional regulation and the role of chromatin structure in transcription and development.
© 2018 Gottesfeld and Carey.

Keywords:  RNA polymerase; chromatin; epigenetics; nucleosome; transcription

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Substances:

Year:  2018        PMID: 30068547      PMCID: PMC6130936          DOI: 10.1074/jbc.TM118.004544

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  19 in total

1.  Redundant roles for the TFIID and SAGA complexes in global transcription.

Authors:  T I Lee; H C Causton; F C Holstege; W C Shen; N Hannett; E G Jennings; F Winston; M R Green; R A Young
Journal:  Nature       Date:  2000-06-08       Impact factor: 49.962

Review 2.  New problems in RNA polymerase II transcription initiation: matching the diversity of core promoters with a variety of promoter recognition factors.

Authors:  Ferenc Müller; Màté A Demény; Làszlò Tora
Journal:  J Biol Chem       Date:  2007-03-29       Impact factor: 5.157

Review 3.  Structural insights into transcription initiation by RNA polymerase II.

Authors:  Sebastian Grünberg; Steven Hahn
Journal:  Trends Biochem Sci       Date:  2013-10-11       Impact factor: 13.807

Review 4.  Conserved RNA polymerase II initiation complex structure.

Authors:  Merle Hantsche; Patrick Cramer
Journal:  Curr Opin Struct Biol       Date:  2017-04-22       Impact factor: 6.809

Review 5.  Emerging roles of transcriptional enhancers in chromatin looping and promoter-proximal pausing of RNA polymerase II.

Authors:  Huan Meng; Blaine Bartholomew
Journal:  J Biol Chem       Date:  2017-11-29       Impact factor: 5.157

6.  A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II.

Authors:  Y J Kim; S Björklund; Y Li; M H Sayre; R D Kornberg
Journal:  Cell       Date:  1994-05-20       Impact factor: 41.582

7.  Chromatin States in Mouse Sperm Correlate with Embryonic and Adult Regulatory Landscapes.

Authors:  Yoon Hee Jung; Michael E G Sauria; Xiaowen Lyu; Manjinder S Cheema; Juan Ausio; James Taylor; Victor G Corces
Journal:  Cell Rep       Date:  2017-02-07       Impact factor: 9.423

8.  Inhibition of PRC2 activity by a gain-of-function H3 mutation found in pediatric glioblastoma.

Authors:  Peter W Lewis; Manuel M Müller; Matthew S Koletsky; Francisco Cordero; Shu Lin; Laura A Banaszynski; Benjamin A Garcia; Tom W Muir; Oren J Becher; C David Allis
Journal:  Science       Date:  2013-03-28       Impact factor: 47.728

Review 9.  RNA polymerase II transcription: structure and mechanism.

Authors:  Xin Liu; David A Bushnell; Roger D Kornberg
Journal:  Biochim Biophys Acta       Date:  2012-09-18

Review 10.  The complex structure and function of Mediator.

Authors:  Thomas M Harper; Dylan J Taatjes
Journal:  J Biol Chem       Date:  2017-09-14       Impact factor: 5.157

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  6 in total

1.  P311, a novel intrinsically disordered protein, regulates adipocyte development.

Authors:  Sha'Kayla Nunez; Corey Young; Olayinka Adebayo; Kesavulu Muni Muppuru; Kameswara Rao Badri
Journal:  Biochem Biophys Res Commun       Date:  2019-05-27       Impact factor: 3.575

Review 2.  Detect accessible chromatin using ATAC-sequencing, from principle to applications.

Authors:  Yuanyuan Sun; Nan Miao; Tao Sun
Journal:  Hereditas       Date:  2019-08-15       Impact factor: 3.271

3.  Arc Regulates Transcription of Genes for Plasticity, Excitability and Alzheimer's Disease.

Authors:  How-Wing Leung; Gabriel Foo; Antonius VanDongen
Journal:  Biomedicines       Date:  2022-08-11

4.  The Landscape of Accessible Chromatin during Yak Adipocyte Differentiation.

Authors:  Zhilong Zhang; Yongfeng Zhang; Qi Bao; Yarong Gu; Chunnian Liang; Min Chu; Xian Guo; Pengjia Bao; Ping Yan
Journal:  Int J Mol Sci       Date:  2022-09-01       Impact factor: 6.208

Review 5.  Nuclear Pore Proteins in Regulation of Chromatin State.

Authors:  Terra M Kuhn; Maya Capelson
Journal:  Cells       Date:  2019-11-09       Impact factor: 6.600

6.  A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues.

Authors:  Michelle M Halstead; Colin Kern; Perot Saelao; Ying Wang; Ganrea Chanthavixay; Juan F Medrano; Alison L Van Eenennaam; Ian Korf; Christopher K Tuggle; Catherine W Ernst; Huaijun Zhou; Pablo J Ross
Journal:  BMC Genomics       Date:  2020-10-07       Impact factor: 3.969

  6 in total

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