Literature DB >> 30359581

Transcriptional and Epigenetic Regulation by the Mechanistic Target of Rapamycin Complex 1 Pathway.

R Nicholas Laribee1.   

Abstract

Nutrient availability impacts health such that nutrient excess states can dysregulate epigenetic and transcriptional pathways to cause many diseases. Increasing evidence implicates aberrant regulation of nutrient signaling cascades as one means of communicating nutrient information to the epigenetic and transcriptional regulatory machinery. One such signaling cascade, the mechanistic target of rapamycin complex 1 (mTORC1), is conserved from yeast to man, and it is deregulated in diverse disease states. The catalytic subunit of the mTORC1 kinase complex (Tor1 or Tor2 in budding yeast and mTor in mammals) phosphorylates several downstream effectors regulating transcriptional and translational responses controlling growth and proliferation. Delineating mechanisms of cytoplasmic nutrient mTORC1 activation continues to be a major research focus. However, Tor kinases not only localize to the cytoplasm but also are found in the nucleus where they selectively bind and regulate genes controlling cellular metabolism and anabolism. The nuclear mTORC1 functions are now beginning to be defined, and they suggest that mTORC1 has a critical role in regulating the complex transcriptional activities required for ribosomal biogenesis. The mTORC1 pathway also interacts with epigenetic regulators required for modifying chromatin structure and function to control gene expression. Because altered nutrient states exert both individual and transgenerational phenotypic changes, mTORC1 signaling to chromatin effectors may have a significant role in mediating the effects of diet and nutrients on the epigenome. This article will discuss the recent inroads into the function of nuclear mTORC1 and its role in epigenetic and transcriptional regulation.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 30359581      PMCID: PMC6289701          DOI: 10.1016/j.jmb.2018.10.008

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  129 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-14       Impact factor: 11.205

2.  Ribosomal DNA contributes to global chromatin regulation.

Authors:  Silvana Paredes; Keith A Maggert
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-12       Impact factor: 11.205

3.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

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4.  Targets for cell cycle arrest by the immunosuppressant rapamycin in yeast.

Authors:  J Heitman; N R Movva; M N Hall
Journal:  Science       Date:  1991-08-23       Impact factor: 47.728

5.  Mammalian Sir2 homolog SIRT7 is an activator of RNA polymerase I transcription.

Authors:  Ethan Ford; Renate Voit; Gregory Liszt; Cornelia Magin; Ingrid Grummt; Leonard Guarente
Journal:  Genes Dev       Date:  2006-04-17       Impact factor: 11.361

Review 6.  Ribosome biogenesis in the yeast Saccharomyces cerevisiae.

Authors:  John L Woolford; Susan J Baserga
Journal:  Genetics       Date:  2013-11       Impact factor: 4.562

7.  Rpd3p relocation mediates a transcriptional response to rapamycin in yeast.

Authors:  Emily L Humphrey; Alykhan F Shamji; Bradley E Bernstein; Stuart L Schreiber
Journal:  Chem Biol       Date:  2004-03

8.  DNA damage regulates direct association of TOR kinase with the RNA polymerase II-transcribed HMO1 gene.

Authors:  Arvind Panday; Ashish Gupta; Kavitha Srinivasa; Lijuan Xiao; Mathew D Smith; Anne Grove
Journal:  Mol Biol Cell       Date:  2017-07-12       Impact factor: 4.138

9.  Target of rapamycin signaling regulates high mobility group protein association to chromatin, which functions to suppress necrotic cell death.

Authors:  Hongfeng Chen; Jason J Workman; Alexa Tenga; R Nicholas Laribee
Journal:  Epigenetics Chromatin       Date:  2013-09-02       Impact factor: 4.954

Review 10.  Conserved regulators of Rag GTPases orchestrate amino acid-dependent TORC1 signaling.

Authors:  Katie Powis; Claudio De Virgilio
Journal:  Cell Discov       Date:  2016-03-08       Impact factor: 10.849

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Review 4.  Yeast Crf1p: An activator in need is an activator indeed.

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Journal:  Comput Struct Biotechnol J       Date:  2021-12-08       Impact factor: 7.271

5.  5q35 duplication presents with psychiatric and undergrowth phenotypes mediated by NSD1 overexpression and mTOR signaling downregulation.

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Review 6.  Regulation of Eukaryotic RNAPs Activities by Phosphorylation.

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Review 7.  Nuclear Functions of TOR: Impact on Transcription and the Epigenome.

Authors:  R Nicholas Laribee; Ronit Weisman
Journal:  Genes (Basel)       Date:  2020-06-10       Impact factor: 4.096

Review 8.  The Ins and Outs of Cerebral Malaria Pathogenesis: Immunopathology, Extracellular Vesicles, Immunometabolism, and Trained Immunity.

Authors:  Frederic Sierro; Georges E R Grau
Journal:  Front Immunol       Date:  2019-04-17       Impact factor: 7.561

9.  Kaposi's Sarcoma-Associated Herpesvirus Lytic Replication Interferes with mTORC1 Regulation of Autophagy and Viral Protein Synthesis.

Authors:  Eric S Pringle; Carolyn-Ann Robinson; Craig McCormick
Journal:  J Virol       Date:  2019-10-15       Impact factor: 5.103

  9 in total

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