Literature DB >> 28502981

Mechanisms of gene flow in archaea.

Alexander Wagner1, Rachel J Whitaker2,3, David J Krause4, Jan-Hendrik Heilers1, Marleen van Wolferen1, Chris van der Does1, Sonja-Verena Albers1.   

Abstract

Archaea are diverse, ecologically important, single-celled microorganisms. They have unique functions and features, such as methanogenesis and the composition of their cell envelope, although many characteristics are shared with the other domains of life, either through ancestry or through promiscuous horizontal gene transfer. The exchange of genetic material is a major driving force for genome evolution across the tree of life and has a role in archaeal speciation, adaptation and maintenance of diversity. In this Review, we discuss our current knowledge of archaeal mechanisms of DNA transfer and highlight the role of gene transfer in archaeal evolution.

Mesh:

Year:  2017        PMID: 28502981     DOI: 10.1038/nrmicro.2017.41

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  143 in total

Review 1.  Gene transfer agents: phage-like elements of genetic exchange.

Authors:  Andrew S Lang; Olga Zhaxybayeva; J Thomas Beatty
Journal:  Nat Rev Microbiol       Date:  2012-06-11       Impact factor: 60.633

2.  Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1.

Authors:  Takaaki Sato; Toshiaki Fukui; Haruyuki Atomi; Tadayuki Imanaka
Journal:  J Bacteriol       Date:  2003-01       Impact factor: 3.490

3.  Natural competence in the hyperthermophilic archaeon Pyrococcus furiosus facilitates genetic manipulation: construction of markerless deletions of genes encoding the two cytoplasmic hydrogenases.

Authors:  Gina L Lipscomb; Karen Stirrett; Gerrit J Schut; Fei Yang; Francis E Jenney; Robert A Scott; Michael W W Adams; Janet Westpheling
Journal:  Appl Environ Microbiol       Date:  2011-02-11       Impact factor: 4.792

Review 4.  The CRISPR-Cas immune system: biology, mechanisms and applications.

Authors:  Devashish Rath; Lina Amlinger; Archana Rath; Magnus Lundgren
Journal:  Biochimie       Date:  2015-04-10       Impact factor: 4.079

5.  Genetic transformation in the methanogen Methanococcus voltae PS.

Authors:  G Bertani; L Baresi
Journal:  J Bacteriol       Date:  1987-06       Impact factor: 3.490

6.  Cell fusion and hybrids in Archaea: prospects for genome shuffling and accelerated strain development for biotechnology.

Authors:  Adit Naor; Uri Gophna
Journal:  Bioengineered       Date:  2012-10-30       Impact factor: 3.269

7.  Proteomic analysis of secreted membrane vesicles of archaeal Sulfolobus species reveals the presence of endosome sorting complex components.

Authors:  Albert F Ellen; Sonja-Verena Albers; Wim Huibers; Angela Pitcher; Cedric F V Hobel; Heinz Schwarz; Mihaela Folea; Stefan Schouten; Egbert J Boekema; Bert Poolman; Arnold J M Driessen
Journal:  Extremophiles       Date:  2008-10-31       Impact factor: 2.395

8.  Hyperthermophilic archaea produce membrane vesicles that can transfer DNA.

Authors:  Marie Gaudin; Emilie Gauliard; Stefan Schouten; Ludivine Houel-Renault; Pascal Lenormand; Evelyne Marguet; Patrick Forterre
Journal:  Environ Microbiol Rep       Date:  2012-05-07       Impact factor: 3.541

9.  Origins of major archaeal clades correspond to gene acquisitions from bacteria.

Authors:  Shijulal Nelson-Sathi; Filipa L Sousa; Mayo Roettger; Nabor Lozada-Chávez; Thorsten Thiergart; Arnold Janssen; David Bryant; Giddy Landan; Peter Schönheit; Bettina Siebers; James O McInerney; William F Martin
Journal:  Nature       Date:  2014-10-15       Impact factor: 49.962

Review 10.  Steady at the wheel: conservative sex and the benefits of bacterial transformation.

Authors:  Ole Herman Ambur; Jan Engelstädter; Pål J Johnsen; Eric L Miller; Daniel E Rozen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-10-19       Impact factor: 6.237

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  30 in total

1.  Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes.

Authors:  Hila Sberro; Brayon J Fremin; Soumaya Zlitni; Fredrik Edfors; Nicholas Greenfield; Michael P Snyder; Georgios A Pavlopoulos; Nikos C Kyrpides; Ami S Bhatt
Journal:  Cell       Date:  2019-08-08       Impact factor: 41.582

2.  A flourishing field: going back to the roots of the Archaea.

Authors: 
Journal:  Nat Rev Microbiol       Date:  2017-11-10       Impact factor: 60.633

Review 3.  A physiological perspective on the origin and evolution of photosynthesis.

Authors:  William F Martin; Donald A Bryant; J Thomas Beatty
Journal:  FEMS Microbiol Rev       Date:  2018-03-01       Impact factor: 16.408

Review 4.  Functional horizontal gene transfer from bacteria to eukaryotes.

Authors:  Filip Husnik; John P McCutcheon
Journal:  Nat Rev Microbiol       Date:  2017-11-27       Impact factor: 60.633

Review 5.  Type IV secretion in Gram-negative and Gram-positive bacteria.

Authors:  Elisabeth Grohmann; Peter J Christie; Gabriel Waksman; Steffen Backert
Journal:  Mol Microbiol       Date:  2018-01-18       Impact factor: 3.501

Review 6.  Role of the Extremolytes Ectoine and Hydroxyectoine as Stress Protectants and Nutrients: Genetics, Phylogenomics, Biochemistry, and Structural Analysis.

Authors:  Laura Czech; Lucas Hermann; Nadine Stöveken; Alexandra A Richter; Astrid Höppner; Sander H J Smits; Johann Heider; Erhard Bremer
Journal:  Genes (Basel)       Date:  2018-03-22       Impact factor: 4.096

Review 7.  Genomic attributes of thermophilic and hyperthermophilic bacteria and archaea.

Authors:  Digvijay Verma; Vinay Kumar; Tulasi Satyanarayana
Journal:  World J Microbiol Biotechnol       Date:  2022-06-13       Impact factor: 3.312

8.  Type IV-Like Pili Facilitate Transformation in Naturally Competent Archaea.

Authors:  Dallas R Fonseca; Mohd Farid Abdul Halim; Matthew P Holten; Kyle C Costa
Journal:  J Bacteriol       Date:  2020-10-08       Impact factor: 3.490

9.  Proposal of the reverse flow model for the origin of the eukaryotic cell based on comparative analyses of Asgard archaeal metabolism.

Authors:  Anja Spang; Courtney W Stairs; Nina Dombrowski; Laura Eme; Jonathan Lombard; Eva F Caceres; Chris Greening; Brett J Baker; Thijs J G Ettema
Journal:  Nat Microbiol       Date:  2019-04-01       Impact factor: 17.745

Review 10.  Biodiversity-based development and evolution: the emerging research systems in model and non-model organisms.

Authors:  Long Zhao; Feng Gao; Shan Gao; Yujun Liang; Hongan Long; Zhiyi Lv; Ying Su; Naihao Ye; Liusuo Zhang; Chengtian Zhao; Xiaoyu Wang; Weibo Song; Shicui Zhang; Bo Dong
Journal:  Sci China Life Sci       Date:  2021-04-22       Impact factor: 6.038

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