Literature DB >> 35695998

Genomic attributes of thermophilic and hyperthermophilic bacteria and archaea.

Digvijay Verma1, Vinay Kumar2, Tulasi Satyanarayana3.   

Abstract

Thermophiles and hyperthermophiles are immensely useful in understanding the evolution of life, besides their utility in environmental and industrial biotechnology. Advancements in sequencing technologies have revolutionized the field of microbial genomics. The massive generation of data enhances the sequencing coverage multi-fold and allows to analyse the entire genomic features of microbes efficiently and accurately. The mandate of a pure isolate can also be bypassed where whole metagenome-assembled genomes and single cell-based sequencing have fulfilled the majority of the criteria to decode various attributes of microbial genomes. A boom has, therefore, been seen in analysing the extremophilic bacteria and archaea using sequence-based approaches. Due to extensive sequence analysis, it becomes easier to understand the gene flow and their evolution among the members of bacteria and archaea. For instance, sequencing unveiled that Thermotoga maritima shares around 24% of genes of archaeal origin. Comparative and functional genomics provide an analytical view to understanding the microbial diversity of thermophilic bacteria and archaea, their interactions with other microbes, their adaptations, gene flow, and evolution over time. In this review, the genomic features of thermophilic bacteria and archaea are dealt with comprehensively.
© 2022. The Author(s), under exclusive licence to Springer Nature B.V.

Entities:  

Keywords:  Archaea; Bacteria; Genomics; High throughput sequencing; Hyperthermophiles; Metagenomes; Thermophiles

Mesh:

Year:  2022        PMID: 35695998     DOI: 10.1007/s11274-022-03327-z

Source DB:  PubMed          Journal:  World J Microbiol Biotechnol        ISSN: 0959-3993            Impact factor:   3.312


  139 in total

1.  Purification and characterization of a new hyperthermostable, allosamidin-insensitive and denaturation-resistant chitinase from the hyperthermophilic archaeon Thermococcus chitonophagus.

Authors:  Evi Andronopoulou; Constantinos E Vorgias
Journal:  Extremophiles       Date:  2002-10-18       Impact factor: 2.395

2.  Phylogenomic re-assessment of the thermophilic genus Geobacillus.

Authors:  Habibu Aliyu; Pedro Lebre; Jochen Blom; Don Cowan; Pieter De Maayer
Journal:  Syst Appl Microbiol       Date:  2016-10-04       Impact factor: 4.022

3.  A highly conserved plasmid from the extreme thermophile Thermotoga maritima MC24 is a member of a family of plasmids distributed worldwide.

Authors:  T Akimkina; P Ivanov; S Kostrov; T Sokolova; E Bonch-Osmolovskaya; K Firman; C F Dutta; J A McClellan
Journal:  Plasmid       Date:  1999-11       Impact factor: 3.466

Review 4.  Fischerella thermalis: a model organism to study thermophilic diazotrophy, photosynthesis and multicellularity in cyanobacteria.

Authors:  Jaime Alcorta; Pablo Vergara-Barros; Laura A Antonaru; María E Alcamán-Arias; Dennis J Nürnberg; Beatriz Díez
Journal:  Extremophiles       Date:  2019-09-11       Impact factor: 2.395

5.  Hyperthermostable endoglucanase from Pyrococcus horikoshii.

Authors:  Susumu Ando; Hiroyasu Ishida; Yoshitsugu Kosugi; Kazuhiko Ishikawa
Journal:  Appl Environ Microbiol       Date:  2002-01       Impact factor: 4.792

6.  Physiological aspects involved in production of xylanolytic enzymes by deep-sea hyperthermophilic archaeon Pyrodictium abyssi.

Authors:  C M Andrade; W B Aguiar; G Antranikian
Journal:  Appl Biochem Biotechnol       Date:  2001       Impact factor: 2.926

Review 7.  Shuffling genes around in hot environments: the unique DNA transporter of Thermus thermophilus.

Authors:  Beate Averhoff
Journal:  FEMS Microbiol Rev       Date:  2009-01-16       Impact factor: 16.408

8.  Characterization of the Recombinant Thermostable Lipase (Pf2001) from Pyrococcus furiosus: Effects of Thioredoxin Fusion Tag and Triton X-100.

Authors:  Sylvia Maria Campbell Alquéres; Roberta Vieira Branco; Denise Maria Guimarães Freire; Tito Lívio Moitinho Alves; Orlando Bonifácio Martins; Rodrigo Volcan Almeida
Journal:  Enzyme Res       Date:  2011-06-30

9.  Thermostable chitinase from Cohnella sp. A01: isolation and product optimization.

Authors:  Nasrin Aliabadi; Saeed Aminzadeh; Ali Asghar Karkhane; Kamahldin Haghbeen
Journal:  Braz J Microbiol       Date:  2016-07-26       Impact factor: 2.476

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