Literature DB >> 28502465

Application of NMR to studies of intrinsically disordered proteins.

Eric B Gibbs1, Erik C Cook1, Scott A Showalter2.   

Abstract

The prevalence of intrinsically disordered protein regions, particularly in eukaryotic proteins, and their clear functional advantages for signaling and gene regulation have created an imperative for high-resolution structural and mechanistic studies. NMR spectroscopy has played a central role in enhancing not only our understanding of the intrinsically disordered native state, but also how that state contributes to biological function. While pathological functions associated with protein aggregation are well established, it has recently become clear that disordered regions also mediate functionally advantageous assembly into high-order structures that promote the formation of membrane-less sub-cellular compartments and even hydrogels. Across the range of functional assembly states accessed by disordered regions, post-translational modifications and regulatory macromolecular interactions, which can also be investigated by NMR spectroscopy, feature prominently. Here we will explore the many ways in which NMR has advanced our understanding of the physical-chemical phase space occupied by disordered protein regions and provide prospectus for the future role of NMR in this emerging and exciting field.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Amyloid; Nuclear magnetic resonance; Phase separation; Phosphorylation; Post-translational modification; Protein-protein interactions

Mesh:

Substances:

Year:  2017        PMID: 28502465     DOI: 10.1016/j.abb.2017.05.008

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  28 in total

1.  Concomitant disorder and high-affinity zinc binding in the human zinc- and iron-regulated transport protein 4 intracellular loop.

Authors:  Elizabeth M Bafaro; Mark W Maciejewski; Jeffrey C Hoch; Robert E Dempski
Journal:  Protein Sci       Date:  2019-03-12       Impact factor: 6.725

Review 2.  The Structural and Functional Diversity of Intrinsically Disordered Regions in Transmembrane Proteins.

Authors:  Rajeswari Appadurai; Vladimir N Uversky; Anand Srivastava
Journal:  J Membr Biol       Date:  2019-05-28       Impact factor: 1.843

Review 3.  The (un)structural biology of biomolecular liquid-liquid phase separation using NMR spectroscopy.

Authors:  Anastasia C Murthy; Nicolas L Fawzi
Journal:  J Biol Chem       Date:  2020-01-07       Impact factor: 5.157

4.  Effect of a Paramagnetic Spin Label on the Intrinsically Disordered Peptide Ensemble of Amyloid-β.

Authors:  Sukanya Sasmal; James Lincoff; Teresa Head-Gordon
Journal:  Biophys J       Date:  2017-09-05       Impact factor: 4.033

5.  Biochemical, biophysical and molecular dynamics studies on the proteoglycan-like domain of carbonic anhydrase IX.

Authors:  Emma Langella; Martina Buonanno; Daniela Vullo; Nina Dathan; Marilisa Leone; Claudiu T Supuran; Giuseppina De Simone; Simona Maria Monti
Journal:  Cell Mol Life Sci       Date:  2018-03-21       Impact factor: 9.261

6.  Sequence Effects on Size, Shape, and Structural Heterogeneity in Intrinsically Disordered Proteins.

Authors:  Upayan Baul; Debayan Chakraborty; Mauro L Mugnai; John E Straub; D Thirumalai
Journal:  J Phys Chem B       Date:  2019-04-15       Impact factor: 2.991

Review 7.  Methods for Physical Characterization of Phase-Separated Bodies and Membrane-less Organelles.

Authors:  Diana M Mitrea; Bappaditya Chandra; Mylene C Ferrolino; Eric B Gibbs; Michele Tolbert; Michael R White; Richard W Kriwacki
Journal:  J Mol Biol       Date:  2018-07-24       Impact factor: 5.469

8.  Direct detection of carbon and nitrogen nuclei for high-resolution analysis of intrinsically disordered proteins using NMR spectroscopy.

Authors:  E B Gibbs; R W Kriwacki
Journal:  Methods       Date:  2018-01-16       Impact factor: 3.608

9.  NMR refinement and peptide folding using the GROMACS software.

Authors:  Anna Sinelnikova; David van der Spoel
Journal:  J Biomol NMR       Date:  2021-03-28       Impact factor: 2.835

Review 10.  Perspective: the essential role of NMR in the discovery and characterization of intrinsically disordered proteins.

Authors:  H Jane Dyson; Peter E Wright
Journal:  J Biomol NMR       Date:  2019-10-15       Impact factor: 2.835

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