Literature DB >> 31139867

The Structural and Functional Diversity of Intrinsically Disordered Regions in Transmembrane Proteins.

Rajeswari Appadurai1, Vladimir N Uversky2,3, Anand Srivastava4.   

Abstract

The intrinsically disordered proteins and protein regions (IDPs/IDPRs) do not have unique structures, but are known to be functionally important and their conformational flexibility and structural plasticity have engendered a paradigmatic shift in the classical sequence-structure-function maxim. Fundamental understanding in this field has significantly evolved since the discovery of this class of proteins about 25 years ago. Though the IDPRs of transmembrane proteins (TMP-IDPRs) comply with the broad definition of typical IDPs and IDPRs found in water-soluble globular proteins, much less is explored and known about them. In this review, we assimilate the key emerging biophysical principles from the limited studies on TMP-IDPRs and provide several context-specific biological examples to highlight the ubiquitous nature of TMP-IDPRs and their functional importance in cellular functions. Besides providing a spectrum of insights from sequence to structural disorder and functions, we also review the challenges and methodological advances in studying the structure-function relationship of TMP-IDPRs. We also lay stress upon the importance of an integrative framework, where ensemble-averaged (and mostly low-resolution) data from multiple experiments can be faithfully integrated with modelling techniques such as advanced sampling, coarse-graining, and free energy minimization methods for a high-fidelity characterization of TMP-IDPRs. We close the review by providing futuristic perspective with suggestions on how we could use the ideas and methods from the exciting field of protein engineering in conjunction with integrative modelling framework to advance the IDPR field and harness the sequence-disorder-function paradigm towards functional design of proteins.

Entities:  

Keywords:  Integrative modelling; Intrinsically disordered regions; Protein design; Transmembrane proteins

Mesh:

Substances:

Year:  2019        PMID: 31139867     DOI: 10.1007/s00232-019-00069-2

Source DB:  PubMed          Journal:  J Membr Biol        ISSN: 0022-2631            Impact factor:   1.843


  276 in total

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Review 2.  Conditionally and transiently disordered proteins: awakening cryptic disorder to regulate protein function.

Authors:  Ursula Jakob; Richard Kriwacki; Vladimir N Uversky
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Review 3.  Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics.

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Journal:  PLoS Comput Biol       Date:  2016-04-28       Impact factor: 4.475

Review 4.  The coming of age of de novo protein design.

Authors:  Po-Ssu Huang; Scott E Boyken; David Baker
Journal:  Nature       Date:  2016-09-15       Impact factor: 49.962

5.  Functions of short lifetime biological structures at large: the case of intrinsically disordered proteins.

Authors:  Vladimir N Uversky
Journal:  Brief Funct Genomics       Date:  2020-01-22       Impact factor: 4.241

6.  Regulatory R region of the CFTR chloride channel is a dynamic integrator of phospho-dependent intra- and intermolecular interactions.

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Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-04       Impact factor: 11.205

7.  Phase transitions in the assembly of multivalent signalling proteins.

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Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

8.  Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners.

Authors:  Christopher J Oldfield; Jingwei Meng; Jack Y Yang; Mary Qu Yang; Vladimir N Uversky; A Keith Dunker
Journal:  BMC Genomics       Date:  2008       Impact factor: 3.969

9.  Intrinsic Disorder in Transmembrane Proteins: Roles in Signaling and Topology Prediction.

Authors:  Jérôme Bürgi; Bin Xue; Vladimir N Uversky; F Gisou van der Goot
Journal:  PLoS One       Date:  2016-07-08       Impact factor: 3.240

Review 10.  Alternative splicing of intrinsically disordered regions and rewiring of protein interactions.

Authors:  Marija Buljan; Guilhem Chalancon; A Keith Dunker; Alex Bateman; S Balaji; Monika Fuxreiter; M Madan Babu
Journal:  Curr Opin Struct Biol       Date:  2013-05-22       Impact factor: 6.809

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  6 in total

1.  Special Issue: Membrane and Receptor Dynamics.

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Journal:  J Membr Biol       Date:  2019-10       Impact factor: 1.843

2.  Structural Insights into the Intrinsically Disordered GPCR C-Terminal Region, Major Actor in Arrestin-GPCR Interaction.

Authors:  Myriam Guillien; Assia Mouhand; Aurélie Fournet; Amandine Gontier; Aleix Martí Navia; Tiago N Cordeiro; Frédéric Allemand; Aurélien Thureau; Jean-Louis Banères; Pau Bernadó; Nathalie Sibille
Journal:  Biomolecules       Date:  2022-04-21

3.  FXYD proteins and sodium pump regulatory mechanisms.

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4.  On the roles of intrinsically disordered proteins and regions in cell communication and signaling.

Authors:  Sarah E Bondos; A Keith Dunker; Vladimir N Uversky
Journal:  Cell Commun Signal       Date:  2021-08-30       Impact factor: 5.712

5.  Multiubiquitination of TRPV4 reduces channel activity independent of surface localization.

Authors:  William H Aisenberg; Brett A McCray; Jeremy M Sullivan; Erika Diehl; Lauren R DeVine; Jonathan Alevy; Anna M Bagnell; Patrice Carr; Jack K Donohue; Benedikt Goretzki; Robert N Cole; Ute A Hellmich; Charlotte J Sumner
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6.  Structural Modeling of Cell Wall Peptidase CwpFM (EntFM) Reveals Distinct Intrinsically Disordered Extensions Specific to Pathogenic Bacillus cereus Strains.

Authors:  Seav-Ly Tran; Delphine Cormontagne; Jasmina Vidic; Gwenaëlle André-Leroux; Nalini Ramarao
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  6 in total

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