Literature DB >> 16949320

Performance of cryogenic probes as a function of ionic strength and sample tube geometry.

Markus W Voehler1, Galen Collier, John K Young, Michael P Stone, Markus W Germann.   

Abstract

The pursuit for more sensitive NMR probes culminated with development of the cryogenic cooled NMR probe. A key factor for the sensitivity is the overall resistance of RF circuitry and sample. Lowering the coil temperature to approximately 25 K and the use of superconducting coil material has greatly reduced the resistance contribution of the hardware. However, the resistance of a salty sample remains the same and evolves as the major factor determining the signal-to-noise ratio. Several approaches have been proposed to reduce the resistance contribution of the sample. These range from encapsulating proteins in a water cavity formed by reverse micelles in low viscosity fluids to the optimal selection of low mobility, low conductivity buffer ions. Here we demonstrate that changing the sample diameter has a pronounced effect on the sample resistance and this results in dramatic improvements of the signal-to-noise ratio and shorter pi/2 pulses. We determined these parameters for common 5 mm NMR tubes under different experimental conditions and compared them to the 2, 3 and 4 mm tubes, in addition, 5mm Shigemi tubes were included since these are widely used. We demonstrate benefits and applicability of studying NMR samples with up to 4M salt concentrations in cryogenic probes. Under high salt conditions, best results in terms of short pi/2 pulses and high signal-to-noise ratios are obtained using 2 or 3mm NMR tubes, especially when limited sample is available. The 4 mm tube is preferred when sample amounts are abundant at intermediate salt conditions.

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Year:  2006        PMID: 16949320      PMCID: PMC4852285          DOI: 10.1016/j.jmr.2006.08.002

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  25 in total

1.  Preparation of encapsulated proteins dissolved in low viscosity fluids.

Authors:  M R Ehrhardt; P F Flynn; A J Wand
Journal:  J Biomol NMR       Date:  1999-05       Impact factor: 2.835

2.  Effect of body coil electric field distribution on receive-only surface coil heating.

Authors:  C C Guclu
Journal:  J Magn Reson Imaging       Date:  2001-10       Impact factor: 4.813

3.  Preparation, characterization, and NMR spectroscopy of encapsulated proteins dissolved in low viscosity fluids.

Authors:  Charles R Babu; Peter F Flynn; A Joshua Wand
Journal:  J Biomol NMR       Date:  2003-04       Impact factor: 2.835

4.  A high-resolution NMR probe in which the coil and preamplifier are cooled with liquid helium. 1984.

Authors:  P Styles; N F Soffe; C A Scott; D A Cragg; F Row; D J White; P C J White
Journal:  J Magn Reson       Date:  2011-12       Impact factor: 2.229

5.  Novel surfactant mixtures for NMR spectroscopy of encapsulated proteins dissolved in low-viscosity fluids.

Authors:  Ronald W Peterson; Maxim S Pometun; Zhengshuang Shi; A Joshua Wand
Journal:  Protein Sci       Date:  2005-09-30       Impact factor: 6.725

6.  Novel zwitterionic reverse micelles for encapsulation of proteins in low-viscosity media.

Authors:  Sylvain Doussin; Nicolas Birlirakis; Dominique Georgin; Frédéric Taran; Patrick Berthault
Journal:  Chemistry       Date:  2006-05-15       Impact factor: 5.236

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Characterization of an African swine fever virus 20-kDa DNA polymerase involved in DNA repair.

Authors:  M Oliveros; R J Yáñez; M L Salas; J Salas; E Viñuela; L Blanco
Journal:  J Biol Chem       Date:  1997-12-05       Impact factor: 5.157

9.  Low-conductivity buffers for high-sensitivity NMR measurements.

Authors:  Alexander E Kelly; Horng D Ou; Richard Withers; Volker Dötsch
Journal:  J Am Chem Soc       Date:  2002-10-09       Impact factor: 15.419

10.  Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions.

Authors:  M Piotto; V Saudek; V Sklenár
Journal:  J Biomol NMR       Date:  1992-11       Impact factor: 2.835

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  25 in total

1.  Backbone 1H, 15N, and 13C resonance assignments for the NOXO1β PX domain.

Authors:  Nicole Y Davis; Linda C McPhail; David A Horita
Journal:  Biomol NMR Assign       Date:  2010-12-28       Impact factor: 0.746

2.  Solution NMR structure of the C-terminal EF-hand domain of human cardiac sodium channel NaV1.5.

Authors:  Benjamin Chagot; Franck Potet; Jeffrey R Balser; Walter J Chazin
Journal:  J Biol Chem       Date:  2008-12-11       Impact factor: 5.157

3.  Modulation of the structure, catalytic activity, and fidelity of African swine fever virus DNA polymerase X by a reversible disulfide switch.

Authors:  Markus W Voehler; Robert L Eoff; W Hayes McDonald; F Peter Guengerich; Michael P Stone
Journal:  J Biol Chem       Date:  2009-05-05       Impact factor: 5.157

4.  NMR-based characterization of a refolding intermediate of beta2-microglobulin labeled using a wheat germ cell-free system.

Authors:  Atsushi Kameda; Eugene-Hayato Morita; Kazumasa Sakurai; Hironobu Naiki; Yuji Goto
Journal:  Protein Sci       Date:  2009-08       Impact factor: 6.725

5.  Carbon and amide detect backbone assignment methods of a novel repeat protein from the staphylocoagulase in S. aureus.

Authors:  Markus Voehler; Maddur Appajaiah Ashoka; Jens Meiler; Paul E Bock
Journal:  Biomol NMR Assign       Date:  2017-08-17       Impact factor: 0.746

6.  Paramagnetic relaxation enhancement for protein-observed 19F NMR as an enabling approach for efficient fragment screening.

Authors:  Laura M L Hawk; Clifford T Gee; Andrew K Urick; Haitao Hu; William C K Pomerantz
Journal:  RSC Adv       Date:  2016-09-29       Impact factor: 3.361

7.  Improved NMR experiments with ¹³C-isotropic mixing for assignment of aromatic and aliphatic side chains in labeled proteins.

Authors:  Helena Kovacs; Alvar Gossert
Journal:  J Biomol NMR       Date:  2014-01-04       Impact factor: 2.835

Review 8.  NMR Methods for Characterizing the Basic Side Chains of Proteins: Electrostatic Interactions, Hydrogen Bonds, and Conformational Dynamics.

Authors:  Dan Nguyen; Chuanying Chen; B Montgomery Pettitt; Junji Iwahara
Journal:  Methods Enzymol       Date:  2018-09-27       Impact factor: 1.600

Review 9.  NMR-based investigations into target DNA search processes of proteins.

Authors:  Junji Iwahara; Levani Zandarashvili; Catherine A Kemme; Alexandre Esadze
Journal:  Methods       Date:  2018-05-10       Impact factor: 3.608

Review 10.  High-field solution NMR spectroscopy as a tool for assessing protein interactions with small molecule ligands.

Authors:  Andria L Skinner; Jennifer S Laurence
Journal:  J Pharm Sci       Date:  2008-11       Impact factor: 3.534

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