Literature DB >> 28486464

Discovering and linking public omics data sets using the Omics Discovery Index.

Yasset Perez-Riverol1, Mingze Bai1,2,3, Felipe da Veiga Leprevost4, Silvano Squizzato1, Young Mi Park1, Kenneth Haug1, Adam J Carroll5, Dylan Spalding1, Justin Paschall1, Mingxun Wang6, Noemi Del-Toro1, Tobias Ternent1, Peng Zhang4,7, Nicola Buso1, Nuno Bandeira6, Eric W Deutsch8, David S Campbell8, Ronald C Beavis9, Reza M Salek1, Ugis Sarkans1, Robert Petryszak1, Maria Keays1, Eoin Fahy10, Manish Sud10, Shankar Subramaniam10, Ariana Barbera11, Rafael C Jiménez12, Alexey I Nesvizhskii4, Susanna-Assunta Sansone13, Christoph Steinbeck1, Rodrigo Lopez1, Juan A Vizcaíno1, Peipei Ping14,15, Henning Hermjakob1,3.   

Abstract

Entities:  

Mesh:

Year:  2017        PMID: 28486464      PMCID: PMC5831141          DOI: 10.1038/nbt.3790

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


× No keyword cloud information.
  10 in total

1.  Bio-ontologies-fast and furious.

Authors:  Judith Blake
Journal:  Nat Biotechnol       Date:  2004-06       Impact factor: 54.908

2.  The NIH Big Data to Knowledge (BD2K) initiative.

Authors:  Philip E Bourne; Vivien Bonazzi; Michelle Dunn; Eric D Green; Mark Guyer; George Komatsoulis; Jennie Larkin; Beth Russell
Journal:  J Am Med Inform Assoc       Date:  2015-11       Impact factor: 4.497

3.  Perspective: Sustaining the big-data ecosystem.

Authors:  Philip E Bourne; Jon R Lorsch; Eric D Green
Journal:  Nature       Date:  2015-11-05       Impact factor: 49.962

4.  Toward effective software solutions for big biology.

Authors:  Pjotr Prins; Joep de Ligt; Artem Tarasov; Ritsert C Jansen; Edwin Cuppen; Philip E Bourne
Journal:  Nat Biotechnol       Date:  2015-07       Impact factor: 54.908

5.  Europe PMC: a full-text literature database for the life sciences and platform for innovation.

Authors: 
Journal:  Nucleic Acids Res       Date:  2014-11-06       Impact factor: 16.971

Review 6.  Making proteomics data accessible and reusable: current state of proteomics databases and repositories.

Authors:  Yasset Perez-Riverol; Emanuele Alpi; Rui Wang; Henning Hermjakob; Juan Antonio Vizcaíno
Journal:  Proteomics       Date:  2015-03       Impact factor: 3.984

7.  Comparison of concept recognizers for building the Open Biomedical Annotator.

Authors:  Nigam H Shah; Nipun Bhatia; Clement Jonquet; Daniel Rubin; Annie P Chiang; Mark A Musen
Journal:  BMC Bioinformatics       Date:  2009-09-17       Impact factor: 3.169

8.  PubMed related articles: a probabilistic topic-based model for content similarity.

Authors:  Jimmy Lin; W John Wilbur
Journal:  BMC Bioinformatics       Date:  2007-10-30       Impact factor: 3.169

9.  The FAIR Guiding Principles for scientific data management and stewardship.

Authors:  Mark D Wilkinson; Michel Dumontier; I Jsbrand Jan Aalbersberg; Gabrielle Appleton; Myles Axton; Arie Baak; Niklas Blomberg; Jan-Willem Boiten; Luiz Bonino da Silva Santos; Philip E Bourne; Jildau Bouwman; Anthony J Brookes; Tim Clark; Mercè Crosas; Ingrid Dillo; Olivier Dumon; Scott Edmunds; Chris T Evelo; Richard Finkers; Alejandra Gonzalez-Beltran; Alasdair J G Gray; Paul Groth; Carole Goble; Jeffrey S Grethe; Jaap Heringa; Peter A C 't Hoen; Rob Hooft; Tobias Kuhn; Ruben Kok; Joost Kok; Scott J Lusher; Maryann E Martone; Albert Mons; Abel L Packer; Bengt Persson; Philippe Rocca-Serra; Marco Roos; Rene van Schaik; Susanna-Assunta Sansone; Erik Schultes; Thierry Sengstag; Ted Slater; George Strawn; Morris A Swertz; Mark Thompson; Johan van der Lei; Erik van Mulligen; Jan Velterop; Andra Waagmeester; Peter Wittenburg; Katherine Wolstencroft; Jun Zhao; Barend Mons
Journal:  Sci Data       Date:  2016-03-15       Impact factor: 6.444

10.  Database resources of the National Center for Biotechnology Information.

Authors: 
Journal:  Nucleic Acids Res       Date:  2015-11-28       Impact factor: 16.971

  10 in total
  58 in total

1.  Unsupervised classification of multi-omics data during cardiac remodeling using deep learning.

Authors:  Neo Christopher Chung; Bilal Mirza; Howard Choi; Jie Wang; Ding Wang; Peipei Ping; Wei Wang
Journal:  Methods       Date:  2019-03-07       Impact factor: 3.608

2.  Cardioinformatics: the nexus of bioinformatics and precision cardiology.

Authors:  Bohdan B Khomtchouk; Diem-Trang Tran; Kasra A Vand; Matthew Might; Or Gozani; Themistocles L Assimes
Journal:  Brief Bioinform       Date:  2020-12-01       Impact factor: 11.622

Review 3.  Biomedical Informatics on the Cloud: A Treasure Hunt for Advancing Cardiovascular Medicine.

Authors:  Peipei Ping; Henning Hermjakob; Jennifer S Polson; Panagiotis V Benos; Wei Wang
Journal:  Circ Res       Date:  2018-04-27       Impact factor: 17.367

Review 4.  Cardiovascular Metabolomics.

Authors:  Robert W McGarrah; Scott B Crown; Guo-Fang Zhang; Svati H Shah; Christopher B Newgard
Journal:  Circ Res       Date:  2018-04-27       Impact factor: 17.367

5.  Cloud-based archived metabolomics data: A resource for in-source fragmentation/annotation, meta-analysis and systems biology.

Authors:  Amelia Palermo; Tao Huan; Duane Rinehart; Markus M Rinschen; Shuzhao Li; Valerie B O'Donnell; Eoin Fahy; Jingchuan Xue; Shankar Subramaniam; H Paul Benton; Gary Siuzdak
Journal:  Anal Sci Adv       Date:  2020-06-13

6.  Finding useful data across multiple biomedical data repositories using DataMed.

Authors:  Lucila Ohno-Machado; Susanna-Assunta Sansone; George Alter; Ian Fore; Jeffrey Grethe; Hua Xu; Alejandra Gonzalez-Beltran; Philippe Rocca-Serra; Anupama E Gururaj; Elizabeth Bell; Ergin Soysal; Nansu Zong; Hyeon-Eui Kim
Journal:  Nat Genet       Date:  2017-05-26       Impact factor: 38.330

7.  A Second Look at FAIR in Proteomic Investigations.

Authors:  J Harry Caufield; John Fu; Ding Wang; Vladimir Guevara-Gonzalez; Wei Wang; Peipei Ping
Journal:  J Proteome Res       Date:  2021-03-13       Impact factor: 4.466

Review 8.  Review of multi-omics data resources and integrative analysis for human brain disorders.

Authors:  Xianjun Dong; Chunyu Liu; Mikhail Dozmorov
Journal:  Brief Funct Genomics       Date:  2021-07-17       Impact factor: 4.241

Review 9.  Multi-omics integration in biomedical research - A metabolomics-centric review.

Authors:  Maria A Wörheide; Jan Krumsiek; Gabi Kastenmüller; Matthias Arnold
Journal:  Anal Chim Acta       Date:  2020-10-22       Impact factor: 6.558

10.  Human OMICs and Computational Biology Research in Africa: Current Challenges and Prospects.

Authors:  Yosr Hamdi; Lyndon Zass; Houcemeddine Othman; Fouzia Radouani; Imane Allali; Mariem Hanachi; Chiamaka Jessica Okeke; Melek Chaouch; Maureen Bilinga Tendwa; Chaimae Samtal; Reem Mohamed Sallam; Nihad Alsayed; Michael Turkson; Samah Ahmed; Alia Benkahla; Lilia Romdhane; Oussema Souiai; Özlem Tastan Bishop; Kais Ghedira; Faisal Mohamed Fadlelmola; Nicola Mulder; Samar Kamal Kassim
Journal:  OMICS       Date:  2021-04-01
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.