Literature DB >> 29700073

Biomedical Informatics on the Cloud: A Treasure Hunt for Advancing Cardiovascular Medicine.

Peipei Ping1,2,3,4, Henning Hermjakob5,6, Jennifer S Polson5,2, Panagiotis V Benos7,8, Wei Wang5,4.   

Abstract

In the digital age of cardiovascular medicine, the rate of biomedical discovery can be greatly accelerated by the guidance and resources required to unearth potential collections of knowledge. A unified computational platform leverages metadata to not only provide direction but also empower researchers to mine a wealth of biomedical information and forge novel mechanistic insights. This review takes the opportunity to present an overview of the cloud-based computational environment, including the functional roles of metadata, the architecture schema of indexing and search, and the practical scenarios of machine learning-supported molecular signature extraction. By introducing several established resources and state-of-the-art workflows, we share with our readers a broadly defined informatics framework to phenotype cardiovascular health and disease.
© 2018 American Heart Association, Inc.

Entities:  

Keywords:  cardiovascular disease; environment; informatics; machine learning; metadata

Mesh:

Year:  2018        PMID: 29700073      PMCID: PMC6192708          DOI: 10.1161/CIRCRESAHA.117.310967

Source DB:  PubMed          Journal:  Circ Res        ISSN: 0009-7330            Impact factor:   17.367


  49 in total

1.  A comparison of non-symmetric entropy-based classification trees and support vector machine for cardiovascular risk stratification.

Authors:  Anima Singh; John V Guttag
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2011

Review 2.  Diverse mechanisms and machineries for import of mitochondrial proteins.

Authors:  Dusanka Milenkovic; Judith Müller; Diana Stojanovski; Nikolaus Pfanner; Agnieszka Chacinska
Journal:  Biol Chem       Date:  2007-09       Impact factor: 3.915

Review 3.  Multiple pathways for sorting mitochondrial precursor proteins.

Authors:  Natalia Bolender; Albert Sickmann; Richard Wagner; Chris Meisinger; Nikolaus Pfanner
Journal:  EMBO Rep       Date:  2008-01       Impact factor: 8.807

4.  Globus Platform-as-a-Service for Collaborative Science Applications.

Authors:  Rachana Ananthakrishnan; Kyle Chard; Ian Foster; Steven Tuecke
Journal:  Concurr Comput       Date:  2015-02       Impact factor: 1.536

Review 5.  The role of lysosomes and proteases in hormone secretion and degradation.

Authors:  B S Chertow
Journal:  Endocr Rev       Date:  1981       Impact factor: 19.871

Review 6.  Deep Learning in Medical Image Analysis.

Authors:  Dinggang Shen; Guorong Wu; Heung-Il Suk
Journal:  Annu Rev Biomed Eng       Date:  2017-03-09       Impact factor: 9.590

7.  Percent emphysema, airflow obstruction, and impaired left ventricular filling.

Authors:  R Graham Barr; David A Bluemke; Firas S Ahmed; J Jeffery Carr; Paul L Enright; Eric A Hoffman; Rui Jiang; Steven M Kawut; Richard A Kronmal; João A C Lima; Eyal Shahar; Lewis J Smith; Karol E Watson
Journal:  N Engl J Med       Date:  2010-01-21       Impact factor: 91.245

8.  Reactome: a database of reactions, pathways and biological processes.

Authors:  David Croft; Gavin O'Kelly; Guanming Wu; Robin Haw; Marc Gillespie; Lisa Matthews; Michael Caudy; Phani Garapati; Gopal Gopinath; Bijay Jassal; Steven Jupe; Irina Kalatskaya; Shahana Mahajan; Bruce May; Nelson Ndegwa; Esther Schmidt; Veronica Shamovsky; Christina Yung; Ewan Birney; Henning Hermjakob; Peter D'Eustachio; Lincoln Stein
Journal:  Nucleic Acids Res       Date:  2010-11-09       Impact factor: 16.971

9.  Reactome knowledgebase of human biological pathways and processes.

Authors:  Lisa Matthews; Gopal Gopinath; Marc Gillespie; Michael Caudy; David Croft; Bernard de Bono; Phani Garapati; Jill Hemish; Henning Hermjakob; Bijay Jassal; Alex Kanapin; Suzanna Lewis; Shahana Mahajan; Bruce May; Esther Schmidt; Imre Vastrik; Guanming Wu; Ewan Birney; Lincoln Stein; Peter D'Eustachio
Journal:  Nucleic Acids Res       Date:  2008-11-03       Impact factor: 16.971

10.  Learning mixed graphical models with separate sparsity parameters and stability-based model selection.

Authors:  Andrew J Sedgewick; Ivy Shi; Rory M Donovan; Panayiotis V Benos
Journal:  BMC Bioinformatics       Date:  2016-06-06       Impact factor: 3.307

View more
  8 in total

1.  Omics, Big Data, and Precision Medicine in Cardiovascular Sciences.

Authors:  Edward Lau; Joseph C Wu
Journal:  Circ Res       Date:  2018-04-27       Impact factor: 17.367

2.  Cardioinformatics: the nexus of bioinformatics and precision cardiology.

Authors:  Bohdan B Khomtchouk; Diem-Trang Tran; Kasra A Vand; Matthew Might; Or Gozani; Themistocles L Assimes
Journal:  Brief Bioinform       Date:  2020-12-01       Impact factor: 11.622

Review 3.  Unlocking the Secrets of Mitochondria in the Cardiovascular System: Path to a Cure in Heart Failure—A Report from the 2018 National Heart, Lung, and Blood Institute Workshop

Authors:  Rong Tian; Wilson S. Colucci; Zoltan Arany; Markus M. Bachschmid; Scott W. Ballinger; Sihem Boudina; James E. Bruce; David W. Busija; Sergey Dikalov; Gerald W. Dorn; Zorina S. Galis; Roberta A. Gottlieb; Daniel P. Kelly; Richard N. Kitsis; Mark J. Kohr; Daniel Levy; E. Douglas Lewandowski; Joseph M. McClung; Daria Mochly-Rosen; Kevin D. O'Brien; Brian O'Rourke; Joon-Young Park; Peipei Ping; Michael N. Sack; Shey-Shing Sheu; Yang Shi; Sruti Shiva; Douglas C. Wallace; Robert G. Weiss; Hilary J. Vernon; Renee Wong; Lisa Schwartz Longacre
Journal:  Circulation       Date:  2019-10-01       Impact factor: 29.690

4.  Identification of Potential Risk Genes and the Immune Landscape of Idiopathic Pulmonary Arterial Hypertension via Microarray Gene Expression Dataset Reanalysis.

Authors:  Jing Xu; Yicheng Yang; Yuejin Yang; Changming Xiong
Journal:  Genes (Basel)       Date:  2021-01-19       Impact factor: 4.096

5.  Orchestrating privacy-protected big data analyses of data from different resources with R and DataSHIELD.

Authors:  Yannick Marcon; Tom Bishop; Demetris Avraam; Xavier Escriba-Montagut; Patricia Ryser-Welch; Stuart Wheater; Paul Burton; Juan R González
Journal:  PLoS Comput Biol       Date:  2021-03-30       Impact factor: 4.475

Review 6.  Environmental exposure as a risk-modifying factor in liver diseases: Knowns and unknowns.

Authors:  Juliane I Beier; Gavin E Arteel
Journal:  Acta Pharm Sin B       Date:  2021-09-10       Impact factor: 11.413

Review 7.  Data Integration Challenges for Machine Learning in Precision Medicine.

Authors:  Mireya Martínez-García; Enrique Hernández-Lemus
Journal:  Front Med (Lausanne)       Date:  2022-01-25

8.  The Oxford Royal College of General Practitioners Clinical Informatics Digital Hub: Protocol to Develop Extended COVID-19 Surveillance and Trial Platforms.

Authors:  Nicholas Jones; Simon de Lusignan; Jienchi Dorward; Rachel Byford; Harshana Liyanage; John Briggs; Filipa Ferreira; Oluwafunmi Akinyemi; Gayatri Amirthalingam; Chris Bates; Jamie Lopez Bernal; Gavin Dabrera; Alex Eavis; Alex J Elliot; Michael Feher; Else Krajenbrink; Uy Hoang; Gary Howsam; Jonathan Leach; Cecilia Okusi; Brian Nicholson; Philip Nieri; Julian Sherlock; Gillian Smith; Mark Thomas; Nicholas Thomas; Manasa Tripathy; William Victor; John Williams; Ian Wood; Maria Zambon; John Parry; Shaun O'Hanlon; Mark Joy; Chris Butler; Martin Marshall; F D Richard Hobbs
Journal:  JMIR Public Health Surveill       Date:  2020-07-02
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.