Literature DB >> 33794662

Human OMICs and Computational Biology Research in Africa: Current Challenges and Prospects.

Yosr Hamdi1,2, Lyndon Zass3, Houcemeddine Othman4, Fouzia Radouani5, Imane Allali3,6, Mariem Hanachi7,8, Chiamaka Jessica Okeke9, Melek Chaouch7, Maureen Bilinga Tendwa9, Chaimae Samtal10,11, Reem Mohamed Sallam12,13, Nihad Alsayed14, Michael Turkson15, Samah Ahmed14, Alia Benkahla7, Lilia Romdhane1,8, Oussema Souiai7, Özlem Tastan Bishop9, Kais Ghedira7, Faisal Mohamed Fadlelmola14, Nicola Mulder3, Samar Kamal Kassim12.   

Abstract

Following the publication of the first human genome, OMICs research, including genomics, transcriptomics, proteomics, and metagenomics, has been on the rise. OMICs studies revealed the complex genetic diversity among human populations and challenged our understandings of genotype-phenotype correlations. Africa, being the cradle of the first modern humans, is distinguished by a large genetic diversity within its populations and rich ethnolinguistic history. However, the available human OMICs tools and databases are not representative of this diversity, therefore creating significant gaps in biomedical research. African scientists, students, and publics are among the key contributors to OMICs systems science. This expert review examines the pressing issues in human OMICs research, education, and development in Africa, as seen through a lens of computational biology, public health relevant technology innovation, critically-informed science governance, and how best to harness OMICs data to benefit health and societies in Africa and beyond. We underscore the disparities between North and Sub-Saharan Africa at different levels. A harmonized African ethnolinguistic classification would help address annotation challenges associated with population diversity. Finally, building on the existing strategic research initiatives, such as the H3Africa and H3ABioNet Consortia, we highly recommend addressing large-scale multidisciplinary research challenges, strengthening research collaborations and knowledge transfer, and enhancing the ability of African researchers to influence and shape national and international research, policy, and funding agendas. This article and analysis contribute to a deeper understanding of past and current challenges in the African OMICs innovation ecosystem, while also offering foresight on future innovation trajectories.

Entities:  

Keywords:  Africa; African OMICs innovation ecosystem; bioinformatics; computational biology; diversity; foresight; public health

Mesh:

Year:  2021        PMID: 33794662      PMCID: PMC8060717          DOI: 10.1089/omi.2021.0004

Source DB:  PubMed          Journal:  OMICS        ISSN: 1536-2310


  107 in total

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Authors:  Dobrin Nedelkov
Journal:  Proteomics       Date:  2008-02       Impact factor: 3.984

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Journal:  OMICS       Date:  2014-12

Review 3.  Ethnically diverse pluripotent stem cells for drug development.

Authors:  Eyitayo S Fakunle; Jeanne F Loring
Journal:  Trends Mol Med       Date:  2012-11-09       Impact factor: 11.951

Review 4.  Broad Consent for Genomic Research and Biobanking: Perspectives from Low- and Middle-Income Countries.

Authors:  Paulina Tindana; Jantina de Vries
Journal:  Annu Rev Genomics Hum Genet       Date:  2016-02-22       Impact factor: 8.929

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Authors:  Save Kumwenda; El Hadji A Niang; Pauline W Orondo; Pote William; Lateefah Oyinlola; Gedeon N Bongo; Bernadette Chiwona
Journal:  Malawi Med J       Date:  2017-03       Impact factor: 0.875

6.  Sex and ethnic differences in 47 candidate proteomic markers of cardiovascular disease: the Mayo Clinic proteomic markers of arteriosclerosis study.

Authors:  Charles X Kim; Kent R Bailey; George G Klee; Allison A Ellington; Guanghui Liu; Thomas H Mosley; Hamid Rehman; Iftikhar J Kullo
Journal:  PLoS One       Date:  2010-02-05       Impact factor: 3.240

Review 7.  Data Sharing: Convert Challenges into Opportunities.

Authors:  Ana Sofia Figueiredo
Journal:  Front Public Health       Date:  2017-12-04

8.  Construction and characterization of the Korean whole saliva proteome to determine ethnic differences in human saliva proteome.

Authors:  Ha Ra Cho; Han Sol Kim; Jun Seo Park; Seung Cheol Park; Kwang Pyo Kim; Troy D Wood; Yong Seok Choi
Journal:  PLoS One       Date:  2017-07-24       Impact factor: 3.240

9.  Bioinformatics education--perspectives and challenges out of Africa.

Authors:  Özlem Tastan Bishop; Ezekiel F Adebiyi; Ahmed M Alzohairy; Dean Everett; Kais Ghedira; Amel Ghouila; Judit Kumuthini; Nicola J Mulder; Sumir Panji; Hugh-G Patterton
Journal:  Brief Bioinform       Date:  2014-07-02       Impact factor: 11.622

10.  Genetic variation reveals large-scale population expansion and migration during the expansion of Bantu-speaking peoples.

Authors:  Sen Li; Carina Schlebusch; Mattias Jakobsson
Journal:  Proc Biol Sci       Date:  2014-09-10       Impact factor: 5.349

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2.  Longitudinal and Comparative Analysis of Gut Microbiota of Tunisian Newborns According to Delivery Mode.

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Review 3.  Two Decades of Desiccation Biology: A Systematic Review of the Best Studied Angiosperm Resurrection Plants.

Authors:  Shandry M Tebele; Rose A Marks; Jill M Farrant
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4.  African Genomic Medicine Portal: A Web Portal for Biomedical Applications.

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