Literature DB >> 28546571

Finding useful data across multiple biomedical data repositories using DataMed.

Lucila Ohno-Machado1,2, Susanna-Assunta Sansone3, George Alter4, Ian Fore5, Jeffrey Grethe6, Hua Xu7, Alejandra Gonzalez-Beltran3, Philippe Rocca-Serra3, Anupama E Gururaj7, Elizabeth Bell1, Ergin Soysal7, Nansu Zong1, Hyeon-Eui Kim1.   

Abstract

Entities:  

Mesh:

Year:  2017        PMID: 28546571      PMCID: PMC6460922          DOI: 10.1038/ng.3864

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


× No keyword cloud information.
  7 in total

1.  The NIH Big Data to Knowledge (BD2K) initiative.

Authors:  Philip E Bourne; Vivien Bonazzi; Michelle Dunn; Eric D Green; Mark Guyer; George Komatsoulis; Jennie Larkin; Beth Russell
Journal:  J Am Med Inform Assoc       Date:  2015-11       Impact factor: 4.497

2.  PDBML: the representation of archival macromolecular structure data in XML.

Authors:  John Westbrook; Nobutoshi Ito; Haruki Nakamura; Kim Henrick; Helen M Berman
Journal:  Bioinformatics       Date:  2004-10-27       Impact factor: 6.937

3.  Discovering and linking public omics data sets using the Omics Discovery Index.

Authors:  Yasset Perez-Riverol; Mingze Bai; Felipe da Veiga Leprevost; Silvano Squizzato; Young Mi Park; Kenneth Haug; Adam J Carroll; Dylan Spalding; Justin Paschall; Mingxun Wang; Noemi Del-Toro; Tobias Ternent; Peng Zhang; Nicola Buso; Nuno Bandeira; Eric W Deutsch; David S Campbell; Ronald C Beavis; Reza M Salek; Ugis Sarkans; Robert Petryszak; Maria Keays; Eoin Fahy; Manish Sud; Shankar Subramaniam; Ariana Barbera; Rafael C Jiménez; Alexey I Nesvizhskii; Susanna-Assunta Sansone; Christoph Steinbeck; Rodrigo Lopez; Juan A Vizcaíno; Peipei Ping; Henning Hermjakob
Journal:  Nat Biotechnol       Date:  2017-05-09       Impact factor: 54.908

4.  Policy: NIH plans to enhance reproducibility.

Authors:  Francis S Collins; Lawrence A Tabak
Journal:  Nature       Date:  2014-01-30       Impact factor: 49.962

Review 5.  PubMed and beyond: a survey of web tools for searching biomedical literature.

Authors:  Zhiyong Lu
Journal:  Database (Oxford)       Date:  2011-01-18       Impact factor: 3.451

6.  DATS, the data tag suite to enable discoverability of datasets.

Authors:  Susanna-Assunta Sansone; Alejandra Gonzalez-Beltran; Philippe Rocca-Serra; George Alter; Jeffrey S Grethe; Hua Xu; Ian M Fore; Jared Lyle; Anupama E Gururaj; Xiaoling Chen; Hyeon-Eui Kim; Nansu Zong; Yueling Li; Ruiling Liu; I Burak Ozyurt; Lucila Ohno-Machado
Journal:  Sci Data       Date:  2017-06-06       Impact factor: 6.444

7.  The FAIR Guiding Principles for scientific data management and stewardship.

Authors:  Mark D Wilkinson; Michel Dumontier; I Jsbrand Jan Aalbersberg; Gabrielle Appleton; Myles Axton; Arie Baak; Niklas Blomberg; Jan-Willem Boiten; Luiz Bonino da Silva Santos; Philip E Bourne; Jildau Bouwman; Anthony J Brookes; Tim Clark; Mercè Crosas; Ingrid Dillo; Olivier Dumon; Scott Edmunds; Chris T Evelo; Richard Finkers; Alejandra Gonzalez-Beltran; Alasdair J G Gray; Paul Groth; Carole Goble; Jeffrey S Grethe; Jaap Heringa; Peter A C 't Hoen; Rob Hooft; Tobias Kuhn; Ruben Kok; Joost Kok; Scott J Lusher; Maryann E Martone; Albert Mons; Abel L Packer; Bengt Persson; Philippe Rocca-Serra; Marco Roos; Rene van Schaik; Susanna-Assunta Sansone; Erik Schultes; Thierry Sengstag; Ted Slater; George Strawn; Morris A Swertz; Mark Thompson; Johan van der Lei; Erik van Mulligen; Jan Velterop; Andra Waagmeester; Peter Wittenburg; Katherine Wolstencroft; Jun Zhao; Barend Mons
Journal:  Sci Data       Date:  2016-03-15       Impact factor: 6.444

  7 in total
  29 in total

1.  Foundry: a message-oriented, horizontally scalable ETL system for scientific data integration and enhancement.

Authors:  Ibrahim Burak Ozyurt; Jeffrey S Grethe
Journal:  Database (Oxford)       Date:  2018-01-01       Impact factor: 3.451

2.  Improving average ranking precision in user searches for biomedical research datasets.

Authors:  Douglas Teodoro; Luc Mottin; Julien Gobeill; Arnaud Gaudinat; Thérèse Vachon; Patrick Ruch
Journal:  Database (Oxford)       Date:  2017-01-01       Impact factor: 3.451

3.  Leveraging word embeddings and medical entity extraction for biomedical dataset retrieval using unstructured texts.

Authors:  Yanshan Wang; Majid Rastegar-Mojarad; Ravikumar Komandur-Elayavilli; Hongfang Liu
Journal:  Database (Oxford)       Date:  2017-01-01       Impact factor: 3.451

4.  A review of harmonization methods for studying dietary patterns.

Authors:  Venkata Sukumar Gurugubelli; Hua Fang; James M Shikany; Salvador V Balkus; Joshua Rumbut; Hieu Ngo; Honggang Wang; Jeroan J Allison; Lyn M Steffen
Journal:  Smart Health (Amst)       Date:  2022-01-13

5.  Supervised Methods for Biomarker Detection from Microarray Experiments.

Authors:  Angela Serra; Luca Cattelani; Michele Fratello; Vittorio Fortino; Pia Anneli Sofia Kinaret; Dario Greco
Journal:  Methods Mol Biol       Date:  2022

Review 6.  Cardiovascular informatics: building a bridge to data harmony.

Authors:  John Harry Caufield; Dibakar Sigdel; John Fu; Howard Choi; Vladimir Guevara-Gonzalez; Ding Wang; Peipei Ping
Journal:  Cardiovasc Res       Date:  2022-02-21       Impact factor: 13.081

Review 7.  Data Sharing: Convert Challenges into Opportunities.

Authors:  Ana Sofia Figueiredo
Journal:  Front Public Health       Date:  2017-12-04

8.  A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge.

Authors:  Trevor Cohen; Kirk Roberts; Anupama E Gururaj; Xiaoling Chen; Saeid Pournejati; George Alter; William R Hersh; Dina Demner-Fushman; Lucila Ohno-Machado; Hua Xu
Journal:  Database (Oxford)       Date:  2017-01-01       Impact factor: 3.451

9.  Finding relevant biomedical datasets: the UC San Diego solution for the bioCADDIE Retrieval Challenge.

Authors:  Wei Wei; Zhanglong Ji; Yupeng He; Kai Zhang; Yuanchi Ha; Qi Li; Lucila Ohno-Machado
Journal:  Database (Oxford)       Date:  2018-01-01       Impact factor: 3.451

10.  A FAIR guide for data providers to maximise sharing of human genomic data.

Authors:  Manuel Corpas; Nadezda V Kovalevskaya; Amanda McMurray; Fiona G G Nielsen
Journal:  PLoS Comput Biol       Date:  2018-03-15       Impact factor: 4.475

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.