Literature DB >> 28472335

Tools for the Precision Medicine Era: How to Develop Highly Personalized Treatment Recommendations From Cohort and Registry Data Using Q-Learning.

Elizabeth F Krakow, Michael Hemmer, Tao Wang, Brent Logan, Mukta Arora, Stephen Spellman, Daniel Couriel, Amin Alousi, Joseph Pidala, Michael Last, Silvy Lachance, Erica E M Moodie.   

Abstract

Q-learning is a method of reinforcement learning that employs backwards stagewise estimation to identify sequences of actions that maximize some long-term reward. The method can be applied to sequential multiple-assignment randomized trials to develop personalized adaptive treatment strategies (ATSs)-longitudinal practice guidelines highly tailored to time-varying attributes of individual patients. Sometimes, the basis for choosing which ATSs to include in a sequential multiple-assignment randomized trial (or randomized controlled trial) may be inadequate. Nonrandomized data sources may inform the initial design of ATSs, which could later be prospectively validated. In this paper, we illustrate challenges involved in using nonrandomized data for this purpose with a case study from the Center for International Blood and Marrow Transplant Research registry (1995-2007) aimed at 1) determining whether the sequence of therapeutic classes used in graft-versus-host disease prophylaxis and in refractory graft-versus-host disease is associated with improved survival and 2) identifying donor and patient factors with which to guide individualized immunosuppressant selections over time. We discuss how to communicate the potential benefit derived from following an ATS at the population and subgroup levels and how to evaluate its robustness to modeling assumptions. This worked example may serve as a model for developing ATSs from registries and cohorts in oncology and other fields requiring sequential treatment decisions.
© The Author(s) 2017. Published by Oxford University Press on behalf of the Johns Hopkins Bloomberg School of Public Health. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  Q-learning; adaptive treatment strategies; dynamic treatment regimes; graft-versus-host disease; machine learning; personalized medicine; prediction; registry data

Mesh:

Year:  2017        PMID: 28472335      PMCID: PMC6664807          DOI: 10.1093/aje/kwx027

Source DB:  PubMed          Journal:  Am J Epidemiol        ISSN: 0002-9262            Impact factor:   4.897


  22 in total

1.  Dynamic regime marginal structural mean models for estimation of optimal dynamic treatment regimes, Part I: main content.

Authors:  Liliana Orellana; Andrea Rotnitzky; James M Robins
Journal:  Int J Biostat       Date:  2010       Impact factor: 0.968

2.  Dynamic regime marginal structural mean models for estimation of optimal dynamic treatment regimes, Part II: proofs of results.

Authors:  Liliana Orellana; Andrea Rotnitzky; James M Robins
Journal:  Int J Biostat       Date:  2010-03-03       Impact factor: 0.968

3.  A Generalization Error for Q-Learning.

Authors:  Susan A Murphy
Journal:  J Mach Learn Res       Date:  2005-07       Impact factor: 3.654

4.  Demystifying optimal dynamic treatment regimes.

Authors:  Erica E M Moodie; Thomas S Richardson; David A Stephens
Journal:  Biometrics       Date:  2007-06       Impact factor: 2.571

Review 5.  Does antithymocyte globulin have a place in reduced-intensity conditioning for allogeneic hematopoietic stem cell transplantation?

Authors:  Tanya Siddiqi; Didier Blaise
Journal:  Hematology Am Soc Hematol Educ Program       Date:  2012

6.  Variable Selection for Qualitative Interactions.

Authors:  L Gunter; J Zhu; S A Murphy
Journal:  Stat Methodol       Date:  2011-01-30

7.  Evaluating multiple treatment courses in clinical trials.

Authors:  P F Thall; R E Millikan; H G Sung
Journal:  Stat Med       Date:  2000-04-30       Impact factor: 2.373

8.  Impact of immune modulation with anti-T-cell antibodies on the outcome of reduced-intensity allogeneic hematopoietic stem cell transplantation for hematologic malignancies.

Authors:  Robert J Soiffer; Jennifer Lerademacher; Vincent Ho; Fangyu Kan; Andrew Artz; Richard E Champlin; Steven Devine; Luis Isola; Hillard M Lazarus; David I Marks; David L Porter; Edmund K Waller; Mary M Horowitz; Mary Eapen
Journal:  Blood       Date:  2011-04-04       Impact factor: 22.113

9.  Allogeneic stem-cell transplantation using a reduced-intensity conditioning regimen has the capacity to produce durable remissions and long-term disease-free survival in patients with high-risk acute myeloid leukemia and myelodysplasia.

Authors:  Sudhir Tauro; Charles Craddock; Karl Peggs; Gulnaz Begum; Premini Mahendra; Gordon Cook; Judith Marsh; Donald Milligan; Anthony Goldstone; Ann Hunter; Asim Khwaja; Raj Chopra; Timothy Littlewood; Andrew Peniket; Anne Parker; Graham Jackson; Geoff Hale; Mark Cook; Nigel Russell; Stephen Mackinnon
Journal:  J Clin Oncol       Date:  2005-11-28       Impact factor: 44.544

10.  Adenovirus infections following allogeneic stem cell transplantation: incidence and outcome in relation to graft manipulation, immunosuppression, and immune recovery.

Authors:  Suparno Chakrabarti; Vivien Mautner; Husam Osman; Kathryn E Collingham; Chris D Fegan; Paul E Klapper; Paul A H Moss; Donald W Milligan
Journal:  Blood       Date:  2002-09-01       Impact factor: 22.113

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  11 in total

1.  RE: "TOOLS FOR THE PRECISION MEDICINE ERA: HOW TO DEVELOP HIGHLY PERSONALIZED TREATMENT RECOMMENDATIONS FROM COHORT AND REGISTRY DATA USING Q-LEARNING".

Authors: 
Journal:  Am J Epidemiol       Date:  2019-01-01       Impact factor: 4.897

2.  Prediction and recommendation by machine learning through repetitive internal validation for hepatic veno-occlusive disease/sinusoidal obstruction syndrome and early death after allogeneic hematopoietic cell transplantation.

Authors:  Seungjoon Lee; Eunsaem Lee; Sung-Soo Park; Min Sue Park; Jaewoo Jung; Gi June Min; Silvia Park; Sung-Eun Lee; Byung-Sik Cho; Ki-Seong Eom; Yoo-Jin Kim; Seok Lee; Hee-Je Kim; Chang-Ki Min; Seok-Goo Cho; Jong Wook Lee; Hyung Ju Hwang; Jae-Ho Yoon
Journal:  Bone Marrow Transplant       Date:  2022-01-24       Impact factor: 5.483

3.  Artificial Intelligence in Pharmacoepidemiology: A Systematic Review. Part 1-Overview of Knowledge Discovery Techniques in Artificial Intelligence.

Authors:  Maurizio Sessa; Abdul Rauf Khan; David Liang; Morten Andersen; Murat Kulahci
Journal:  Front Pharmacol       Date:  2020-07-16       Impact factor: 5.810

4.  Deep Reinforcement Learning for Dynamic Treatment Regimes on Medical Registry Data.

Authors:  Ying Liu; Brent Logan; Ning Liu; Zhiyuan Xu; Jian Tang; Yanzhi Wang
Journal:  Healthc Inform       Date:  2017-08

5.  A cure-rate model for Q-learning: Estimating an adaptive immunosuppressant treatment strategy for allogeneic hematopoietic cell transplant patients.

Authors:  Erica E M Moodie; David A Stephens; Shomoita Alam; Mei-Jie Zhang; Brent Logan; Mukta Arora; Stephen Spellman; Elizabeth F Krakow
Journal:  Biom J       Date:  2018-05-16       Impact factor: 2.207

6.  Learning the Dynamic Treatment Regimes from Medical Registry Data through Deep Q-network.

Authors:  Ning Liu; Ying Liu; Brent Logan; Zhiyuan Xu; Jian Tang; Yanzhi Wang
Journal:  Sci Rep       Date:  2019-02-06       Impact factor: 4.379

7.  The use of PROMs and shared decision-making in medical encounters with patients: An opportunity to deliver value-based health care to patients.

Authors:  Olga C Damman; Anant Jani; Brigit A de Jong; Annemarie Becker; Margot J Metz; Martine C de Bruijne; Danielle R Timmermans; Martina C Cornel; Dirk T Ubbink; Marije van der Steen; Muir Gray; Carla van El
Journal:  J Eval Clin Pract       Date:  2019-12-15       Impact factor: 2.431

Review 8.  Artificial Intelligence in Dermatology: A Practical Introduction to a Paradigm Shift.

Authors:  Bell R Eapen
Journal:  Indian Dermatol Online J       Date:  2020-11-08

Review 9.  A Systematic Review of Machine Learning Techniques in Hematopoietic Stem Cell Transplantation (HSCT).

Authors:  Vibhuti Gupta; Thomas M Braun; Mosharaf Chowdhury; Muneesh Tewari; Sung Won Choi
Journal:  Sensors (Basel)       Date:  2020-10-27       Impact factor: 3.576

Review 10.  A scoping review of studies using observational data to optimise dynamic treatment regimens.

Authors:  Maarten J IJzerman; Julie A Simpson; Robert K Mahar; Myra B McGuinness; Bibhas Chakraborty; John B Carlin
Journal:  BMC Med Res Methodol       Date:  2021-02-22       Impact factor: 4.615

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