Literature DB >> 28452714

The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status.

Dongming Li1,2,3, Ana Marie S Palanca4, So Youn Won1, Lei Gao1,5, Ying Feng1,6, Ajay A Vashisht7, Li Liu1, Yuanyuan Zhao1, Xigang Liu1,3, Xiuyun Wu1,8, Shaofang Li1, Brandon Le1, Yun Ju Kim1, Guodong Yang1, Shengben Li1, Jinyuan Liu8, James A Wohlschlegel7, Hongwei Guo6, Beixin Mo5, Xuemei Chen1,9, Julie A Law4.   

Abstract

DNA methylation is associated with gene silencing in eukaryotic organisms. Although pathways controlling the establishment, maintenance and removal of DNA methylation are known, relatively little is understood about how DNA methylation influences gene expression. Here we identified a METHYL-CpG-BINDING DOMAIN 7 (MBD7) complex in Arabidopsis thaliana that suppresses the transcriptional silencing of two LUCIFERASE (LUC) reporters via a mechanism that is largely downstream of DNA methylation. Although mutations in components of the MBD7 complex resulted in modest increases in DNA methylation concomitant with decreased LUC expression, we found that these hyper-methylation and gene expression phenotypes can be genetically uncoupled. This finding, along with genome-wide profiling experiments showing minimal changes in DNA methylation upon disruption of the MBD7 complex, places the MBD7 complex amongst a small number of factors acting downstream of DNA methylation. This complex, however, is unique as it functions to suppress, rather than enforce, DNA methylation-mediated gene silencing.

Entities:  

Keywords:  A. thaliana; DNA methylation; HSP20; Methyl-CpG-Binding Domain (MBD); RNA-directed DNA methylation (RdDM); chromosomes; genes; plant biology; transcriptional gene silencing; α-crystallin domain (ACD)

Mesh:

Substances:

Year:  2017        PMID: 28452714      PMCID: PMC5462541          DOI: 10.7554/eLife.19893

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  80 in total

1.  The methyl-CpG-binding protein MeCP2 links DNA methylation to histone methylation.

Authors:  Francois Fuks; Paul J Hurd; Daniel Wolf; Xinsheng Nan; Adrian P Bird; Tony Kouzarides
Journal:  J Biol Chem       Date:  2002-11-09       Impact factor: 5.157

2.  Methylated DNA-binding proteins from Arabidopsis.

Authors:  Mikako Ito; Akiko Koike; Nozomu Koizumi; Hiroshi Sano
Journal:  Plant Physiol       Date:  2003-11-06       Impact factor: 8.340

Review 3.  Biological functions of methyl-CpG-binding proteins.

Authors:  Pierre-Antoine Defossez; Irina Stancheva
Journal:  Prog Mol Biol Transl Sci       Date:  2011       Impact factor: 3.622

4.  Body-methylated genes in Arabidopsis thaliana are functionally important and evolve slowly.

Authors:  Shohei Takuno; Brandon S Gaut
Journal:  Mol Biol Evol       Date:  2011-08-02       Impact factor: 16.240

Review 5.  RNA-directed DNA methylation: an epigenetic pathway of increasing complexity.

Authors:  Marjori A Matzke; Rebecca A Mosher
Journal:  Nat Rev Genet       Date:  2014-05-08       Impact factor: 53.242

6.  Transgenerational epigenetic instability is a source of novel methylation variants.

Authors:  Robert J Schmitz; Matthew D Schultz; Mathew G Lewsey; Ronan C O'Malley; Mark A Urich; Ondrej Libiger; Nicholas J Schork; Joseph R Ecker
Journal:  Science       Date:  2011-09-15       Impact factor: 47.728

7.  Genome-wide insertional mutagenesis of Arabidopsis thaliana.

Authors:  José M Alonso; Anna N Stepanova; Thomas J Leisse; Christopher J Kim; Huaming Chen; Paul Shinn; Denise K Stevenson; Justin Zimmerman; Pascual Barajas; Rosa Cheuk; Carmelita Gadrinab; Collen Heller; Albert Jeske; Eric Koesema; Cristina C Meyers; Holly Parker; Lance Prednis; Yasser Ansari; Nathan Choy; Hashim Deen; Michael Geralt; Nisha Hazari; Emily Hom; Meagan Karnes; Celene Mulholland; Ral Ndubaku; Ian Schmidt; Plinio Guzman; Laura Aguilar-Henonin; Markus Schmid; Detlef Weigel; David E Carter; Trudy Marchand; Eddy Risseeuw; Debra Brogden; Albana Zeko; William L Crosby; Charles C Berry; Joseph R Ecker
Journal:  Science       Date:  2003-08-01       Impact factor: 47.728

8.  Regulation of active DNA demethylation by an α-crystallin domain protein in Arabidopsis.

Authors:  Weiqiang Qian; Daisuke Miki; Mingguang Lei; Xiaohong Zhu; Huiming Zhang; Yunhua Liu; Yan Li; Zhaobo Lang; Jing Wang; Kai Tang; Renyi Liu; Jian-Kang Zhu
Journal:  Mol Cell       Date:  2014-07-04       Impact factor: 17.970

9.  Involvement of a GHKL ATPase in RNA-directed DNA methylation in Arabidopsis thaliana.

Authors:  Zdravko J Lorković; Ulf Naumann; Antonius J M Matzke; Marjori Matzke
Journal:  Curr Biol       Date:  2012-05-03       Impact factor: 10.834

10.  Methylation-sensitive expression of a DNA demethylase gene serves as an epigenetic rheostat.

Authors:  Ben P Williams; Daniela Pignatta; Steven Henikoff; Mary Gehring
Journal:  PLoS Genet       Date:  2015-03-31       Impact factor: 5.917

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  4 in total

1.  MBD5 and MBD6 couple DNA methylation to gene silencing through the J-domain protein SILENZIO.

Authors:  Lucia Ichino; Brandon A Boone; Luke Strauskulage; C Jake Harris; Gundeep Kaur; Matthew A Gladstone; Maverick Tan; Suhua Feng; Yasaman Jami-Alahmadi; Sascha H Duttke; James A Wohlschlegel; Xiaodong Cheng; Sy Redding; Steven E Jacobsen
Journal:  Science       Date:  2021-06-03       Impact factor: 63.714

2.  Locus-specific control of the de novo DNA methylation pathway in Arabidopsis by the CLASSY family.

Authors:  Ming Zhou; Ana Marie S Palanca; Julie A Law
Journal:  Nat Genet       Date:  2018-05-07       Impact factor: 38.330

3.  Involvement of MEM1 in DNA demethylation in Arabidopsis.

Authors:  Yanke Lu; Jie Dai; Liu Yang; Yumei La; Shaoxia Zhou; Sheng Qiang; Qianqian Wang; Feng Tan; Yufeng Wu; Weiwen Kong; Honggui La
Journal:  Plant Mol Biol       Date:  2020-01-04       Impact factor: 4.076

4.  Multiplex CRISPR-Cas9 editing of DNA methyltransferases in rice uncovers a class of non-CG methylation specific for GC-rich regions.

Authors:  Daoheng Hu; Yiming Yu; Chun Wang; Yanping Long; Yue Liu; Li Feng; Dongdong Lu; Bo Liu; Jinbu Jia; Rui Xia; Jiamu Du; Xuehua Zhong; Lei Gong; Kejian Wang; Jixian Zhai
Journal:  Plant Cell       Date:  2021-09-24       Impact factor: 12.085

  4 in total

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