Literature DB >> 24805120

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity.

Marjori A Matzke1, Rebecca A Mosher2.   

Abstract

RNA-directed DNA methylation (RdDM) is the major small RNA-mediated epigenetic pathway in plants. RdDM requires a specialized transcriptional machinery that comprises two plant-specific RNA polymerases - Pol IV and Pol V - and a growing number of accessory proteins, the functions of which in the RdDM mechanism are only partially understood. Recent work has revealed variations in the canonical RdDM pathway and identified factors that recruit Pol IV and Pol V to specific target sequences. RdDM, which transcriptionally represses a subset of transposons and genes, is implicated in pathogen defence, stress responses and reproduction, as well as in interallelic and intercellular communication.

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Year:  2014        PMID: 24805120     DOI: 10.1038/nrg3683

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  158 in total

1.  The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci.

Authors:  Ericka R Havecker; Laura M Wallbridge; Thomas J Hardcastle; Maxwell S Bush; Krystyna A Kelly; Ruth M Dunn; Frank Schwach; John H Doonan; David C Baulcombe
Journal:  Plant Cell       Date:  2010-02-19       Impact factor: 11.277

2.  Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis.

Authors:  Bruno Huettel; Tatsuo Kanno; Lucia Daxinger; Werner Aufsatz; Antonius J M Matzke; Marjori Matzke
Journal:  EMBO J       Date:  2006-05-25       Impact factor: 11.598

3.  A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation.

Authors:  Lucia Daxinger; Tatsuo Kanno; Etienne Bucher; Johannes van der Winden; Ulf Naumann; Antonius J M Matzke; Marjori Matzke
Journal:  EMBO J       Date:  2008-12-11       Impact factor: 11.598

4.  An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress.

Authors:  Hidetaka Ito; Hervé Gaubert; Etienne Bucher; Marie Mirouze; Isabelle Vaillant; Jerzy Paszkowski
Journal:  Nature       Date:  2011-03-13       Impact factor: 49.962

5.  Evolutionary history of plant multisubunit RNA polymerases IV and V: subunit origins via genome-wide and segmental gene duplications, retrotransposition, and lineage-specific subfunctionalization.

Authors:  S L Tucker; J Reece; T S Ream; C S Pikaard
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2011-03-29

6.  PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis.

Authors:  Rebecca A Mosher; Frank Schwach; David Studholme; David C Baulcombe
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-19       Impact factor: 11.205

7.  IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana.

Authors:  Israel Ausin; Todd C Mockler; Joanne Chory; Steven E Jacobsen
Journal:  Nat Struct Mol Biol       Date:  2009-11-15       Impact factor: 15.369

8.  Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1.

Authors:  Julie A Law; Jiamu Du; Christopher J Hale; Suhua Feng; Krzysztof Krajewski; Ana Marie S Palanca; Brian D Strahl; Dinshaw J Patel; Steven E Jacobsen
Journal:  Nature       Date:  2013-05-01       Impact factor: 49.962

9.  AGO6 functions in RNA-mediated transcriptional gene silencing in shoot and root meristems in Arabidopsis thaliana.

Authors:  Changho Eun; Zdravko J Lorkovic; Ulf Naumann; Quan Long; Ericka R Havecker; Stacey A Simon; Blake C Meyers; Antonius J M Matzke; Marjori Matzke
Journal:  PLoS One       Date:  2011-10-05       Impact factor: 3.240

10.  Interplay among RNA polymerases II, IV and V in RNA-directed DNA methylation at a low copy transgene locus in Arabidopsis thaliana.

Authors:  Wanhui You; Zdravko J Lorkovic; Antonius J M Matzke; Marjori Matzke
Journal:  Plant Mol Biol       Date:  2013-03-20       Impact factor: 4.076

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  522 in total

Review 1.  DNA methylation pathways and their crosstalk with histone methylation.

Authors:  Jiamu Du; Lianna M Johnson; Steven E Jacobsen; Dinshaw J Patel
Journal:  Nat Rev Mol Cell Biol       Date:  2015-09       Impact factor: 94.444

2.  A Dicer-Independent Route for Biogenesis of siRNAs that Direct DNA Methylation in Arabidopsis.

Authors:  Ruiqiang Ye; Zulong Chen; Bi Lian; M Jordan Rowley; Ning Xia; Jijie Chai; Yan Li; Xin-Jian He; Andrzej T Wierzbicki; Yijun Qi
Journal:  Mol Cell       Date:  2015-12-17       Impact factor: 17.970

Review 3.  Epigenetic events in plant male germ cell heat stress responses.

Authors:  Yuanyuan Chen; Florian Müller; Ivo Rieu; Peter Winter
Journal:  Plant Reprod       Date:  2015-12-06       Impact factor: 3.767

4.  Dicer-independent RNA-directed DNA methylation in Arabidopsis.

Authors:  Dong-Lei Yang; Guiping Zhang; Kai Tang; Jingwen Li; Lan Yang; Huan Huang; Heng Zhang; Jian-Kang Zhu
Journal:  Cell Res       Date:  2015-12-08       Impact factor: 25.617

5.  RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome.

Authors:  Qing Li; Jonathan I Gent; Greg Zynda; Jawon Song; Irina Makarevitch; Cory D Hirsch; Candice N Hirsch; R Kelly Dawe; Thelma F Madzima; Karen M McGinnis; Damon Lisch; Robert J Schmitz; Matthew W Vaughn; Nathan M Springer
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-09       Impact factor: 11.205

Review 6.  The First Rule of Plant Transposable Element Silencing: Location, Location, Location.

Authors:  Meredith J Sigman; R Keith Slotkin
Journal:  Plant Cell       Date:  2016-02-11       Impact factor: 11.277

Review 7.  Repeat-Induced Point Mutation and Other Genome Defense Mechanisms in Fungi.

Authors:  Eugene Gladyshev
Journal:  Microbiol Spectr       Date:  2017-07

8.  New discoveries generate new questions about RNA-directed DNA methylation in Arabidopsis.

Authors:  Huiming Zhang; Jian-Kang Zhu
Journal:  Natl Sci Rev       Date:  2017-03-28       Impact factor: 17.275

9.  Oryza sativa RNA-Dependent RNA Polymerase 6 Contributes to Double-Strand Break Formation in Meiosis.

Authors:  Changzhen Liu; Yi Shen; Baoxiang Qin; Huili Wen; Jiawen Cheng; Fei Mao; Wenqing Shi; Ding Tang; Guijie Du; Yafei Li; Yufeng Wu; Zhukuan Cheng
Journal:  Plant Cell       Date:  2020-07-30       Impact factor: 11.277

10.  HISTONE DEACETYLASE6 Controls Gene Expression Patterning and DNA Methylation-Independent Euchromatic Silencing.

Authors:  Emilija Hristova; Kateryna Fal; Laurin Klemme; David Windels; Etienne Bucher
Journal:  Plant Physiol       Date:  2015-04-27       Impact factor: 8.340

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